RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CHEK2O96017 543 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 IGHDP01880 384 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 FTLP02792 175 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 CHRM2P08172 466 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 CCR2P41597 374 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 DPP6P42658 865 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 NPTX2P47972 431 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PIK3CGP48736 1102 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 CLCN3P51790 818 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 ZNF135P52742 658 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 EFNA5P52803 228 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 C21orf58P58505 322 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PTENP60484 403 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 POU6F2P78424 691 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 MC2RQ01718 297 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 GRSF1Q12849 480 aaKnown RBP eCLIP4.2□□□□□ -1.74
USP54-217ENST00000498213 HLXQ14774 488 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 ODF1Q14990 250 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PPP2R5AQ15172 486 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 KYAT1Q16773 422 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 FAM153CQ494X1 144 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 TPGS2Q68CL5 300 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 SLC27A1Q6PCB7 646 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 USP49Q70CQ1 688 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 TRMT1LQ7Z2T5 733 aaKnown RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 ERICH1Q86X53 443 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PDSS2Q86YH6 399 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 Q8NA96 180 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 CEP76Q8TAP6 659 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 ETNPPLQ8TBG4 499 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 SCAMP4Q969E2 229 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 RGMAQ96B86 450 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 ZNF274Q96GC6 653 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 HIC2Q96JB3 615 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 CCDC136Q96JN2 1154 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PDLIM2Q96JY6 352 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PI4K2AQ9BTU6 479 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 CNPPD1Q9BV87 410 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 ASPSCR1Q9BZE9 553 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 TM6SF1Q9BZW5 370 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 TRIM6Q9C030 488 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 C17orf75Q9HAS0 396 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 IL21RQ9HBE5 538 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 KCNMB3Q9NPA1 279 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 STARD5Q9NSY2 213 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 SLC38A7Q9NVC3 462 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PRMT7Q9NVM4 692 aaPredicted RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 RLIMQ9NVW2 624 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 OBP2AQ9NY56 170 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 FOXJ2Q9P0K8 574 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 CTTNBP2NLQ9P2B4 639 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 ADAM28Q9UKQ2 775 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 PCDHA3Q9Y5H8 950 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 BAZ2BQ9UIF8 2168 aaKnown RBP4.2□□□□□ -1.74
USP54-217ENST00000498213 STK36Q9NRP7 1315 aa4.2□□□□□ -1.74
USP54-217ENST00000498213 NUP205Q92621 2012 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ADGRG4Q8IZF6 3080 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 BOD1L1Q8NFC6 3051 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ANKHD1Q8IWZ3 2542 aaKnown RBP4.19□□□□□ -1.74
USP54-217ENST00000498213 A0A087WZ62 844 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 A0A0B4J269 797 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 KLF18A0A0U1RQI7 1052 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ARL5CA6NH57 179 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 LRRC14BA6NHZ5 514 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 E7ENX8 843 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 CPLX1O14810 134 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 MGST3O14880 152 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 SYN3O14994 580 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 CHADO15335 359 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 SLC16A6O15403 523 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 TRIAP1O43715 76 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 STBD1O95210 358 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 IGLV2-14P01704 120 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 PPP3CBP16298 524 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 PTPN2P17706 415 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ITGB6P18564 788 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ITGALP20701 1170 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 GATA3P23771 443 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 HOXA11P31270 313 aaPredicted RBP4.19□□□□□ -1.74
USP54-217ENST00000498213 YWHABP31946 246 aaKnown RBP4.19□□□□□ -1.74
USP54-217ENST00000498213 RPL9P32969 192 aaKnown RBP4.19□□□□□ -1.74
USP54-217ENST00000498213 HSPA4P34932 840 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ACTN2P35609 894 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 DCTP40126 519 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 GRIA3P42263 894 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 UCNP55089 124 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 NXPH1P58417 271 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 NLRP5P59047 1200 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 POU5F1Q01860 360 aaKnown RBP4.19□□□□□ -1.74
USP54-217ENST00000498213 TAP2Q03519 686 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 LAMTOR4Q0VGL1 99 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 SMARCB1Q12824 385 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 PLD1Q13393 1074 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 TUBB3Q13509 450 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 ANKRD1Q15327 319 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 PLEKHG6Q3KR16 790 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 DCAF4L1Q3SXM0 396 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 TMEM196Q5HYL7 178 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 TSTD2Q5T7W7 516 aa4.19□□□□□ -1.74
USP54-217ENST00000498213 SLC8B1Q6J4K2 584 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms