RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MED13Q9UHV7 2174 aa16.57■□□□□ 0.24
VIM-208ENST00000497849 INSIG1O15503 277 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 THRAP10827 490 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 ETFBP38117 255 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 USP8P40818 1118 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 KIAA1024LP59773 190 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 ELP6Q0PNE2 266 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 TRA2AQ13595 282 aaKnown RBP eCLIP16.56■□□□□ 0.24
VIM-208ENST00000497849 CAMK4Q16566 473 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 ATP1A1-AS1Q5TC04 95 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 FHL5Q5TD97 284 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 CAPRIN2Q6IMN6 1127 aaKnown RBP16.56■□□□□ 0.24
VIM-208ENST00000497849 TRNP1Q6NT89 227 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 NLRP14Q86W24 1093 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 ZDHHC17Q8IUH5 632 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 TRIM59Q8IWR1 403 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 UNC5BQ8IZJ1 945 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 AGBL5Q8NDL9 886 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 CCDC112Q8NEF3 446 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 HMCESQ96FZ2 354 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 TIGD1Q96MW7 591 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 GSDMAQ96QA5 445 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 ASPSCR1Q9BZE9 553 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 SYNCQ9H7C4 482 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 DNAI1Q9UI46 699 aa16.56■□□□□ 0.24
VIM-208ENST00000497849 TMCC1O94876 653 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 FGF1P05230 155 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 CD44P16070 742 aaKnown RBP16.55■□□□□ 0.24
VIM-208ENST00000497849 GNLYP22749 145 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 MPSTP25325 297 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 CSF2RBP32927 897 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 FLT3P36888 993 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 LIG3P49916 1009 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 SUOXP51687 545 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 UGP2Q16851 508 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 MANEALQ5VSG8 457 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 NKAIN2Q5VXU1 208 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 ANKS6Q68DC2 871 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 ENOSF1Q7L5Y1 443 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 TIPARPQ7Z3E1 657 aaKnown RBP16.55■□□□□ 0.24
VIM-208ENST00000497849 FAM131BQ86XD5 332 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 BMPERQ8N8U9 685 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 OR4D9Q8NGE8 314 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 KIAA1524Q8TCG1 905 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 SSC4DQ8WTU2 575 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 MAGEH1Q9H213 219 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 CYP4F12Q9HCS2 524 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 PCDH12Q9NPG4 1184 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 PLCB1Q9NQ66 1216 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 TMEM9Q9P0T7 183 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 CSMD1Q96PZ7 3565 aa16.55■□□□□ 0.24
VIM-208ENST00000497849 ESPL1Q14674 2120 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 TSPAN11A1L157 253 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 RHPN2P1A8MT19 583 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 B4E171 279 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 CACNB4O00305 520 aaPredicted RBP16.54■□□□□ 0.24
VIM-208ENST00000497849 TNFRSF10CO14798 259 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 KDELR3O43731 214 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 PIGNO95427 931 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 XPAP23025 273 aaPredicted RBP16.54■□□□□ 0.24
VIM-208ENST00000497849 CSTF2P33240 577 aaKnown RBP eCLIP16.54■□□□□ 0.24
VIM-208ENST00000497849 TSPAN7P41732 249 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 MAPKAPK2P49137 400 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 SNX16P57768 344 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 APBA1Q02410 837 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 RAD51Q06609 339 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 DCAF12Q5T6F0 453 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 TTI2Q6NXR4 508 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 NRROSQ86YC3 692 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 NLGN4XQ8N0W4 816 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 TEX19Q8NA77 164 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 NLGN4YQ8NFZ3 816 aaPredicted RBP16.54■□□□□ 0.24
VIM-208ENST00000497849 ZDHHC1Q8WTX9 485 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 RTP4Q96DX8 246 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 LGR4Q9BXB1 951 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 TMEM248Q9NWD8 314 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 HPCAL4Q9UM19 191 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 NEU3Q9UQ49 428 aa16.54■□□□□ 0.24
VIM-208ENST00000497849 SHANK1Q9Y566 2161 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 HIVEP3Q5T1R4 2406 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 EFCAB7A8K855 629 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 PSMA7O14818 248 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 SEMA7AO75326 666 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 ECEL1O95672 775 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 IGSF6O95976 241 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 PRKCGP05129 697 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 CCNB1P14635 433 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 RHOQP17081 205 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 BMP6P22004 513 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 MAP4P27816 1152 aaKnown RBP16.53■□□□□ 0.24
VIM-208ENST00000497849 MMP12P39900 470 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 SQSTM1Q13501 440 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 SEPT6Q14141 434 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 RAB6CQ53S08 254 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 ZNF787Q6DD87 383 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 ISM2Q6H9L7 571 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 TCTN3Q6NUS6 607 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 TRIM65Q6PJ69 517 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 ZSWIM9Q86XI8 627 aa16.53■□□□□ 0.24
VIM-208ENST00000497849 HCAR2Q8TDS4 363 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms