RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 DPPA4Q7L190 304 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 ABI3BPQ7Z7G0 1075 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 SPATS2Q86XZ4 545 aaKnown RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 DCP2Q8IU60 420 aaKnown RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 NAXDQ8IW45 347 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 BMFQ96LC9 184 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 AGAP3Q96P47 875 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 KLF6Q99612 283 aaPredicted RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 OSBPL8Q9BZF1 889 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 ERVMER34-1Q9H9K5 563 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 PACSIN2Q9UNF0 486 aaPredicted RBP16.02■□□□□ 0.16
LIME1-209ENST00000494776 PCDHGB2Q9Y5G2 931 aa16.02■□□□□ 0.16
LIME1-209ENST00000494776 TRPM6Q9BX84 2022 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CFAP69A5D8W1 941 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 H7C0C1 242 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 FLRT2O43155 660 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 ITGAVP06756 1048 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CTPS1P17812 591 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 VIPR1P32241 457 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CD86P42081 329 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 ATP5OP48047 213 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 PEX5P50542 639 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 NIPAL4Q0D2K0 466 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 ARHGEF7Q14155 803 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 ACOX1Q15067 660 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 INAVAQ3KP66 663 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 DENND2CQ68D51 928 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 LIPIQ6XZB0 460 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 BBS12Q6ZW61 710 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 USP45Q70EL2 814 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 PIP4P1Q86T03 277 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 ARRDC2Q8TBH0 407 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 RHBDD1Q8TEB9 315 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 ALG3Q92685 438 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CENPTQ96BT3 561 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CAMK1GQ96NX5 476 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 FERMT1Q9BQL6 677 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 LZTFL1Q9NQ48 299 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 B4GALT6Q9UBX8 382 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CHKBQ9Y259 395 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 EFR3BQ9Y2G0 817 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 CAPN6Q9Y6Q1 641 aa16.01■□□□□ 0.15
LIME1-209ENST00000494776 GOLGA8CPA6NN73 597 aa16■□□□□ 0.15
LIME1-209ENST00000494776 HACD1B0YJ81 288 aa16■□□□□ 0.15
LIME1-209ENST00000494776 APOC4-APOC2K7ER74 178 aa16■□□□□ 0.15
LIME1-209ENST00000494776 GIPC1O14908 333 aa16■□□□□ 0.15
LIME1-209ENST00000494776 MTSS1O43312 755 aa16■□□□□ 0.15
LIME1-209ENST00000494776 PCDHGA12O60330 932 aa16■□□□□ 0.15
LIME1-209ENST00000494776 TJP3O95049 919 aa16■□□□□ 0.15
LIME1-209ENST00000494776 APOC2P02655 101 aa16■□□□□ 0.15
LIME1-209ENST00000494776 PDHA1P08559 390 aa16■□□□□ 0.15
LIME1-209ENST00000494776 PYGMP11217 842 aa16■□□□□ 0.15
LIME1-209ENST00000494776 PTPN7P35236 360 aa16■□□□□ 0.15
LIME1-209ENST00000494776 THOP1P52888 689 aa16■□□□□ 0.15
LIME1-209ENST00000494776 CCZ1BP86790 482 aa16■□□□□ 0.15
LIME1-209ENST00000494776 CCZ1P86791 482 aaPredicted RBP16■□□□□ 0.15
LIME1-209ENST00000494776 RALGDSQ12967 914 aa16■□□□□ 0.15
LIME1-209ENST00000494776 ZNF211Q13398 564 aaPredicted RBP16■□□□□ 0.15
LIME1-209ENST00000494776 PDE1CQ14123 709 aaPredicted RBP16■□□□□ 0.15
LIME1-209ENST00000494776 PRKD1Q15139 912 aaPredicted RBP16■□□□□ 0.15
LIME1-209ENST00000494776 TEX44Q53QW1 395 aa16■□□□□ 0.15
LIME1-209ENST00000494776 GATAD2AQ86YP4 633 aa16■□□□□ 0.15
LIME1-209ENST00000494776 CNTD1Q8N815 330 aa16■□□□□ 0.15
LIME1-209ENST00000494776 SPOCK2Q92563 424 aa16■□□□□ 0.15
LIME1-209ENST00000494776 ALS2CR12Q96Q35 445 aa16■□□□□ 0.15
LIME1-209ENST00000494776 PCDH9Q9HC56 1237 aa16■□□□□ 0.15
LIME1-209ENST00000494776 MBNL1Q9NR56 388 aaKnown RBP16■□□□□ 0.15
LIME1-209ENST00000494776 CACNA1EQ15878 2313 aa16■□□□□ 0.15
LIME1-209ENST00000494776 ANKRD36A6QL64 1941 aa16■□□□□ 0.15
LIME1-209ENST00000494776 DOCK9Q9BZ29 2069 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 SPTBN2O15020 2390 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 GOLGA6L9A6NEM1 432 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 RECQL5O94762 991 aaPredicted RBP15.99■□□□□ 0.15
LIME1-209ENST00000494776 PCCBP05166 539 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 PTPN3P26045 913 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 IGFALSP35858 605 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 XRCC4Q13426 336 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 PTK2BQ14289 1009 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 IRF4Q15306 451 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 FAM182AQ5T1J6 154 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 AADACL2Q6P093 401 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 TP53I13Q8NBR0 393 aaPredicted RBP15.99■□□□□ 0.15
LIME1-209ENST00000494776 LPCAT1Q8NF37 534 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 PIH1D2Q8WWB5 315 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 SCRN2Q96FV2 425 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 RBM15Q96T37 977 aaKnown RBP eCLIP15.99■□□□□ 0.15
LIME1-209ENST00000494776 TDRD1Q9BXT4 1180 aaKnown RBP15.99■□□□□ 0.15
LIME1-209ENST00000494776 ADGRE3Q9BY15 652 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 DNAJC28Q9NX36 388 aa15.99■□□□□ 0.15
LIME1-209ENST00000494776 KLHL8Q9P2G9 620 aaPredicted RBP15.99■□□□□ 0.15
LIME1-209ENST00000494776 NCOR2Q9Y618 2525 aa15.98■□□□□ 0.15
LIME1-209ENST00000494776 NPIPB15A6NHN6 443 aaPredicted RBP15.98■□□□□ 0.15
LIME1-209ENST00000494776 DDX3YO15523 660 aaKnown RBP15.98■□□□□ 0.15
LIME1-209ENST00000494776 SDC3O75056 442 aa15.98■□□□□ 0.15
LIME1-209ENST00000494776 HEXIM1O94992 359 aaKnown RBP15.98■□□□□ 0.15
LIME1-209ENST00000494776 ALPIP09923 528 aa15.98■□□□□ 0.15
LIME1-209ENST00000494776 EPHA8P29322 1005 aaPredicted RBP15.98■□□□□ 0.15
LIME1-209ENST00000494776 GRK6P43250 576 aa15.98■□□□□ 0.15
LIME1-209ENST00000494776 RXRGP48443 463 aa15.98■□□□□ 0.15
LIME1-209ENST00000494776 EIF3EP60228 445 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms