RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 ZNF333Q96JL9 665 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 DUX5Q96PT3 197 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 C1QTNF4Q9BXJ3 329 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 TMX4Q9H1E5 349 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-218ENST00000493430 ACTR5Q9H9F9 607 aaPredicted RBP3.42□□□□□ -1.86
PTCD3-218ENST00000493430 RNF186Q9NXI6 227 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 IL36RNQ9UBH0 155 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 PGAP2Q9UHJ9 254 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 MYO9BQ13459 2157 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 UTYO14607 1347 aa3.42□□□□□ -1.86
PTCD3-218ENST00000493430 TRIOBPQ9H2D6 2365 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 COL4A4P53420 1690 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 SRRM3A6NNA2 597 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 EYA2O00167 538 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 NCK2O43639 380 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 PLGP00747 810 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 UBTFL1P0CB47 393 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 AVPR1AP37288 418 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 CTCFP49711 727 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 TIMM10P62072 90 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 RHAGQ02094 409 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 PICALMQ13492 652 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 SAFBQ15424 915 aaKnown RBP eCLIP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 CCDC57Q2TAC2 916 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 PLK5Q496M5 336 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 FAM76BQ5HYJ3 339 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 VWA5B1Q5TIE3 1220 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 FJX1Q86VR8 437 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 TMEM200AQ86VY9 491 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 TMEM217Q8N7C4 229 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 LRRC57Q8N9N7 239 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 TDRD7Q8NHU6 1098 aaKnown RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 FAM110DQ8TAY7 271 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 CD99L2Q8TCZ2 262 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 ZKSCAN4Q969J2 545 aaPredicted RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 APOLD1Q96LR9 279 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 SARGQ9BW04 601 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 TMEM120AQ9BXJ8 343 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 NAA15Q9BXJ9 866 aaKnown RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 RETREG1Q9H6L5 497 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 DDX4Q9NQI0 724 aaKnown RBP3.41□□□□□ -1.86
PTCD3-218ENST00000493430 ARL15Q9NXU5 204 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 RAP2CQ9Y3L5 183 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 TANC1Q9C0D5 1861 aa3.41□□□□□ -1.86
PTCD3-218ENST00000493430 LOC102724159A0A0B4J2E5 919 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 TCRBV7S3A2A0A539 114 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 PLSCR5A0PG75 271 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 KIF28PB7ZC32 967 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 SLC16A5O15375 505 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ZNF12P17014 697 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 HOXB9P17482 250 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 CYP2J2P51589 502 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 TMPRSS3P57727 454 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 FAM3BP58499 235 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 HILS1P60008 231 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 DYNLL1P63167 89 aaKnown RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ZBTB16Q05516 673 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 POU5F1BQ06416 359 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 VGLL4Q14135 290 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 SLC39A14Q15043 492 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 PWP2Q15269 919 aaKnown RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 KIF19Q2TAC6 998 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ZNF718Q3SXZ3 478 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ZNF672Q499Z4 452 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 HEPHL1Q6MZM0 1159 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 TMEM71Q6P5X7 295 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 SLC30A9Q6PML9 568 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 FMNL3Q8IVF7 1028 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ITPRIPQ8IWB1 547 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 HORMAD2Q8N7B1 307 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 AGBL3Q8NEM8 1001 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 CLEC4CQ8WTT0 213 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 FAM216AQ8WUB2 273 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 OPTNQ96CV9 577 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 INPP4AQ96PE3 977 aaPredicted RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 SORBS1Q9BX66 1292 aaKnown RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ANKRD2Q9GZV1 360 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 COA1Q9GZY4 146 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 DEFB129Q9H1M3 183 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 HIPK3Q9H422 1215 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 KLHL31Q9H511 634 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 DDX31Q9H8H2 851 aaKnown RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 IL1RAPL2Q9NP60 686 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 PIH1D3Q9NQM4 214 aaKnown RBP3.4□□□□□ -1.87
PTCD3-218ENST00000493430 ZDHHC7Q9NXF8 308 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 EXOC6BQ9Y2D4 811 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 PKP3Q9Y446 797 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 FAM205AQ6ZU69 1335 aa3.4□□□□□ -1.87
PTCD3-218ENST00000493430 HTTP42858 3142 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 A0A1B0GUL7 405 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 DDTLA6NHG4 134 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 PMM2O15305 246 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 KCNJ13O60928 360 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 SOCS5O75159 536 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 FRAT2O75474 233 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 KRT36O76013 467 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 LARGE1O95461 756 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 HLA-DQA2P01906 255 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 MYZAPP0CAP1 466 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms