RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CCDC166P0CW27 439 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 NCF2P19878 526 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 ATP5F1P24539 256 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 PPP3CCP48454 512 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 SCNN1BP51168 640 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 DNAJB13P59910 316 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 PFKPQ01813 784 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 RNF219Q5W0B1 726 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 DNAJB7Q7Z6W7 309 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 RNF135Q8IUD6 432 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 DIS3LQ8TF46 1054 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 PDCD6IPQ8WUM4 868 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 ANKRD49Q8WVL7 239 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 AUTS2Q8WXX7 1259 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 ZFRQ96KR1 1074 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 CRISPLD2Q9H0B8 497 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 POMKQ9H5K3 350 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 SMPD4Q9NXE4 827 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 STOML2Q9UJZ1 356 aa21.18■□□□□ 0.98
CCDC88B-208ENST00000492980 CBX4O00257 560 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 CD3EAPO15446 510 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 URODP06132 367 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 CPOXP36551 454 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SEMA3AQ14563 771 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 KPNB1Q14974 876 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 METTL21CQ5VZV1 264 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SEL1L3Q68CR1 1132 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SCG3Q8WXD2 468 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 TCF7L2Q9NQB0 619 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SPO11Q9Y5K1 396 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 NEMP2A6NFY4 417 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 MEI4A8MW99 385 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 E9PBE3 544 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 ZBTB14O43829 449 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 KLHL41O60662 606 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 TPBGLP0DKB5 382 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 MBL2P11226 248 aaPredicted RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 TFEBP19484 476 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 RFC2P35250 354 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 KHDC1Q4VXA5 237 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 FAM45BPQ6NSW5 357 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 KLC3Q6P597 504 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 ZNF549Q6P9A3 640 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 TMEM207Q6UWW9 146 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 HERC6Q8IVU3 1022 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 PHTF2Q8N3S3 785 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 POU5F2Q8N7G0 328 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 CCNYL1Q8N7R7 359 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 FAM45AQ8TCE6 357 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 WDR60Q8WVS4 1066 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 DDX50Q9BQ39 737 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 TDRD1Q9BXT4 1180 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SHCBP1LQ9BZQ2 653 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SCUBE2Q9NQ36 999 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SPG21Q9NZD8 308 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 CRYL1Q9Y2S2 319 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 OBSL1O75147 1896 aa21.17■□□□□ 0.98
CCDC88B-208ENST00000492980 ABHD14A-ACY1A0A1B0GW23 586 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 TM7SF2O76062 418 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ZNF140P52738 457 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ARF5P84085 180 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 MXRA7P84157 204 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 NSUN2Q08J23 767 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 FSCBQ5H9T9 825 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 MRNIPQ6NTE8 343 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 TRIM67Q6ZTA4 783 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 PIWIL4Q7Z3Z4 852 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 DDX53Q86TM3 631 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 TCEAL8Q8IYN2 117 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 MUC3BQ9H195 1237 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ZNF334Q9HCZ1 680 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 CATSPERZQ9NTU4 200 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 VTI1BQ9UEU0 232 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 INSL5Q9Y5Q6 135 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 SLCO1B7G3V0H7 640 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 DCXO43602 365 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 PRLP01236 227 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 LMNAP02545 664 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 F11P03951 625 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 LAG3P18627 525 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 GNAZP19086 355 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 FDXRP22570 491 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ELF1P32519 619 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 COPAP53621 1224 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ILF2Q12905 390 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ACAP2Q15057 778 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 ACSBG2Q5FVE4 666 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 PIM3Q86V86 326 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 OR4L1Q8NH43 312 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 SH3RF2Q8TEC5 729 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 STON2Q8WXE9 905 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 FAM161BQ96MY7 647 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 SLC22A12Q96S37 553 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 CYP2S1Q96SQ9 504 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 WDR55Q9H6Y2 383 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 NLE1Q9NVX2 485 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 NCKIPSDQ9NZQ3 722 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 C15orf41Q9Y2V0 281 aa21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 MTF2Q9Y483 593 aaPredicted RBP21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms