RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SHC2P98077 582 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 IL9RQ01113 521 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 OTUD4Q01804 1114 aaKnown RBP14.84□□□□□ -0.03
USP4-212ENST00000486549 RALGDSQ12967 914 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 IHHQ14623 411 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 N4BP2L1Q5TBK1 243 aaPredicted RBP14.84□□□□□ -0.03
USP4-212ENST00000486549 KDM7AQ6ZMT4 941 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 DPPA4Q7L190 304 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 ARRDC2Q8TBH0 407 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 ACTL9Q8TC94 416 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 HES6Q96HZ4 224 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 QKIQ96PU8 341 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP4-212ENST00000486549 ALS2CR12Q96Q35 445 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 GDF3Q9NR23 364 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 B4GALT6Q9UBX8 382 aa14.84□□□□□ -0.03
USP4-212ENST00000486549 A0A1W2PQ67 120 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 POM121BA6NF01 834 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 A6NNZ2 444 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 FPGTO14772 594 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 MAGEC1O60732 1142 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 TJP3O95049 919 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 PDHA1P08559 390 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 ELFN1P0C7U0 828 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 CA4P22748 312 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 PTPN3P26045 913 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 EPHB1P54762 984 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 NOMO1Q15155 1222 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 PTPRRQ15256 657 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 ZNF423Q2M1K9 1284 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 DENND2CQ68D51 928 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 IQCHQ86VS3 1027 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 SPATS2Q86XZ4 545 aaKnown RBP14.83□□□□□ -0.04
USP4-212ENST00000486549 OR13H1Q8NG92 308 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 RBM15Q96T37 977 aaKnown RBP eCLIP14.83□□□□□ -0.04
USP4-212ENST00000486549 KLF6Q99612 283 aaPredicted RBP14.83□□□□□ -0.04
USP4-212ENST00000486549 C1QTNF7Q9BXJ2 289 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 TDRD1Q9BXT4 1180 aaKnown RBP14.83□□□□□ -0.04
USP4-212ENST00000486549 C10orf88Q9H8K7 445 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 TM7SF3Q9NS93 570 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 PHTF1Q9UMS5 762 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 CHKBQ9Y259 395 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 EFR3BQ9Y2G0 817 aa14.83□□□□□ -0.04
USP4-212ENST00000486549 HACD1B0YJ81 288 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 F5H423 210 aaPredicted RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 MMP2P08253 660 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 ALPIP09923 528 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 CYP2A6P11509 494 aaPredicted RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 NFKBIAP25963 317 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 PMLP29590 882 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 VIPR1P32241 457 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 IGFALSP35858 605 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 CCT8P50990 548 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 EIF3EP60228 445 aaKnown RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 SKOR1P84550 965 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 OVGP1Q12889 678 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 ACOX1Q15067 660 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 IRF4Q15306 451 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 TEX44Q53QW1 395 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 SEL1L2Q5TEA6 688 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 LIPIQ6XZB0 460 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 KYAT3Q6YP21 454 aaKnown RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 ZNF662Q6ZS27 426 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 Q6ZSR6 202 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 ABI3BPQ7Z7G0 1075 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 DENND6BQ8NEG7 585 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 DEFB124Q8NES8 71 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 LPCAT1Q8NF37 534 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 PIH1D2Q8WWB5 315 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 HTR3CQ8WXA8 447 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 ASB12Q8WXK4 309 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 BMFQ96LC9 184 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 LENG8Q96PV6 779 aaPredicted RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 SMIM14Q96QK8 99 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 ELF4Q99607 663 aaPredicted RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 KCNF1Q9H3M0 494 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 PCDH9Q9HC56 1237 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 KLHL8Q9P2G9 620 aaPredicted RBP14.82□□□□□ -0.04
USP4-212ENST00000486549 HS3ST3A1Q9Y663 406 aa14.82□□□□□ -0.04
USP4-212ENST00000486549 CNOT1A5YKK6 2376 aaKnown RBP14.81□□□□□ -0.04
USP4-212ENST00000486549 SPTBN2O15020 2390 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 A0A0U1RQS6 177 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 GOLGA6L9A6NEM1 432 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 NPIPB15A6NHN6 443 aaPredicted RBP14.81□□□□□ -0.04
USP4-212ENST00000486549 FZD6O60353 706 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 CD59P13987 128 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 NFKB1P19838 968 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 RBL1P28749 1068 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 WASHC5Q12768 1159 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 XRCC4Q13426 336 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 LRRC14Q15048 493 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 RPS6KA1Q15418 735 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 CNGA3Q16281 694 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 PCSK7Q16549 785 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 USP45Q70EL2 814 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 KDELC2Q7Z4H8 507 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 CDKL3Q8IVW4 592 aaPredicted RBP14.81□□□□□ -0.04
USP4-212ENST00000486549 NDUFAF2Q8N183 169 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 SLC22A18ASQ8N1D0 253 aa14.81□□□□□ -0.04
USP4-212ENST00000486549 TP53I13Q8NBR0 393 aaPredicted RBP14.81□□□□□ -0.04
USP4-212ENST00000486549 SETD7Q8WTS6 366 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms