RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 DCP2Q8IU60 420 aaKnown RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ZNF567Q8N184 647 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PGBD5Q8N414 524 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 CNTD1Q8N815 330 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 C1orf54Q8WWF1 131 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 DNASE2BQ8WZ79 361 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 SNX19Q92543 992 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PIGKQ92643 395 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 FAM131CQ96AQ9 280 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ARRDC3Q96B67 414 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ECHDC3Q96DC8 303 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 SCRN2Q96FV2 425 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 HSPA12BQ96MM6 686 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 TMEM121Q9BTD3 319 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 MLPHQ9BV36 600 aaPredicted RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ZDHHC5Q9C0B5 715 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 CDH19Q9H159 772 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 MIR1-1HGQ9H1L0 117 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 GBA3Q9H227 469 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ARRDC1-AS1Q9H2J1 176 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 TRABDQ9H4I3 376 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 USP29Q9HBJ7 922 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 PCDH12Q9NPG4 1184 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 HACD3Q9P035 362 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 MBD1Q9UIS9 605 aaPredicted RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.32□□□□□ -1.08
SF3A1-208ENST00000485618 FADS3Q9Y5Q0 445 aa8.32□□□□□ -1.08
SF3A1-208ENST00000485618 SHROOM3Q8TF72 1996 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 SPAG17Q6Q759 2223 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ACACBO00763 2458 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 A0A1B0GTW7 788 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 A0A1W2PPC4 97 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 A0A1W2PQU0 124 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 RGSL1A5PLK6 1076 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ANKRD66B4E2M5 251 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 CCDC188H7C350 402 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 PSMD11O00231 422 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 PDE2AO00408 941 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 TRAFD1O14545 582 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 FPGTO14772 594 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 MUSKO15146 869 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 BCAT2O15382 392 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 DFNA5O60443 496 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 PMPCBO75439 489 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 TM7SF2O76062 418 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 EPN2O95208 641 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 NDST3O95803 873 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 PYGLP06737 847 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ELFN1P0C7U0 828 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ZNF30P17039 623 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 HLA-DPA1P20036 260 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 VIPR1P32241 457 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 RGRP47804 291 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 LIMK1P53667 647 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ATXN3P54252 364 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 WNT3AP56704 352 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 C21orf59P57076 290 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 SKOR1P84550 965 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ZBTB17Q13105 803 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 TMEM52BQ4KMG9 183 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 NAPEPLDQ6IQ20 393 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 IL27RAQ6UWB1 636 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 SYT10Q6XYQ8 523 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 SYDE1Q6ZW31 735 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 MAATS1Q7Z4T9 603 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 MNS1Q8NEH6 495 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 KIF18AQ8NI77 898 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 ARRDC2Q8TBH0 407 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 RTP4Q96DX8 246 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 SERAC1Q96JX3 654 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 LENG8Q96PV6 779 aaPredicted RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 WDR24Q96S15 920 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 RBM15Q96T37 977 aaKnown RBP eCLIP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 NUSAP1Q9BXS6 441 aaKnown RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 TDRD1Q9BXT4 1180 aaKnown RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 SLC17A9Q9BYT1 436 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 CEP41Q9BYV8 373 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 LRRC40Q9H9A6 602 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 MAGEE1Q9HCI5 957 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 AASDHPPTQ9NRN7 309 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 CHKBQ9Y259 395 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 R3HDM2Q9Y2K5 976 aaKnown RBP8.31□□□□□ -1.08
SF3A1-208ENST00000485618 PPIL1Q9Y3C6 166 aa8.31□□□□□ -1.08
SF3A1-208ENST00000485618 A0A0J9YYE9 177 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 TCRBV7S2A1N4TA0A589 114 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 IGLON5A6NGN9 336 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 AREL1O15033 823 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 LATO43561 262 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 PHF2O75151 1096 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 PPFIA2O75334 1257 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 ECEL1O95672 775 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 TRBC1P01850 177 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 FGF1P05230 155 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 ZNF806P0C7X5 589 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 NFKB1P19838 968 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 BCKDHBP21953 392 aa8.3□□□□□ -1.08
SF3A1-208ENST00000485618 HNRNPA2B1P22626 353 aaKnown RBP8.3□□□□□ -1.08
SF3A1-208ENST00000485618 PMLP29590 882 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms