RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 KELP23276 732 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 SOX5P35711 763 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 LIG3P49916 1009 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 ZNF143P52747 638 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 HLTFQ14527 1009 aaKnown RBP eCLIP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 TGIF1Q15583 401 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 CLPPQ16740 277 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 TCP11X2Q5H9J9 407 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 EFHC2Q5JST6 749 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 RD3Q7Z3Z2 195 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 C17orf82Q86X59 251 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 SLITRK4Q8IW52 837 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 OR56A4Q8NGH8 313 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 SLC30A5Q8TAD4 765 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 SPOCK2Q92563 424 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 ECHDC3Q96DC8 303 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 CMKLR1Q99788 373 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 FAM117AQ9C073 453 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 LRRC19Q9H756 370 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 SYNDIG1Q9H7V2 258 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 UBA2Q9UBT2 640 aaPredicted RBP13.1□□□□□ -0.31
HDAC6-227ENST00000485102 ATP8A1Q9Y2Q0 1164 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 LOXL2Q9Y4K0 774 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 OR1A2Q9Y585 309 aa13.1□□□□□ -0.31
HDAC6-227ENST00000485102 NBASA2RRP1 2371 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 TCRBV5S1A1TA0A578 114 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 CYSRT1A8MQ03 144 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 BUB1BO60566 1050 aaPredicted RBP13.09□□□□□ -0.31
HDAC6-227ENST00000485102 GFPT2O94808 682 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 PIGNO95427 931 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 CALB1P05937 261 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 HGFP14210 728 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 NDST2P52849 883 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 TPM4P67936 248 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 NSUN2Q08J23 767 aaKnown RBP eCLIP13.09□□□□□ -0.31
HDAC6-227ENST00000485102 NFATC3Q12968 1075 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 DPCR1Q3MIW9 517 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 C14orf28Q4W4Y0 310 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 AFMIDQ63HM1 303 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 SPRED1Q7Z699 444 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 ZNF354CQ86Y25 554 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 JAMLQ86YT9 394 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 PYROXD2Q8N2H3 581 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 FUBP1Q96AE4 644 aaKnown RBP13.09□□□□□ -0.31
HDAC6-227ENST00000485102 PDXPQ96GD0 296 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 PCDHB18PQ96TA0 734 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 SAMSN1Q9NSI8 373 aaKnown RBP13.09□□□□□ -0.31
HDAC6-227ENST00000485102 ADAM22Q9P0K1 906 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 PISDQ9UG56 409 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 FZD10Q9ULW2 581 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 DOPEY2Q9Y3R5 2298 aa13.09□□□□□ -0.31
HDAC6-227ENST00000485102 UBR5O95071 2799 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 FAM170AA1A519 330 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 TMEM202A6NGA9 273 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 EIF3CLB5ME19 914 aaKnown RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 CACNB4O00305 520 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PDE2AO00408 941 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PES1O00541 588 aaKnown RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 SUV39H1O43463 412 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PRAMEF11O60813 436 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 RECQL5O94762 991 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 TPM2P07951 284 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 STAT1P42224 750 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 NSFP46459 744 aaKnown RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 POLR2LP62875 67 aaKnown RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 B4GALNT1Q00973 533 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 NR1D2Q14995 579 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 TSR1Q2NL82 804 aaKnown RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 MANEAQ5SRI9 462 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 KCTD16Q68DU8 428 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 LIPIQ6XZB0 460 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 ATG14Q6ZNE5 492 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 NYAP1Q6ZVC0 841 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PRICKLE2Q7Z3G6 844 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 ZNF438Q7Z4V0 828 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 TAF8Q7Z7C8 310 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PHLDB2Q86SQ0 1253 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 ZSWIM9Q86XI8 627 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 CAMK1DQ8IU85 385 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 NETO2Q8NC67 525 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 FAM46DQ8NEK8 389 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 ANKRD20A12PQ8NF67 263 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 OR1E3Q8WZA6 343 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 EXTL1Q92935 676 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 EIF3CQ99613 913 aaKnown RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 NCAPGQ9BPX3 1015 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 CNPY3Q9BT09 278 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 SELENOOQ9BVL4 669 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 ATP13A3Q9H7F0 1226 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 FGF22Q9HCT0 170 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 KCTD5Q9NXV2 234 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 LRIT1Q9P2V4 623 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PCDHB11Q9Y5F2 797 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PCDHGA4Q9Y5G9 962 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 HEMK1Q9Y5R4 338 aaPredicted RBP13.08□□□□□ -0.32
HDAC6-227ENST00000485102 RNF215Q9Y6U7 377 aa13.08□□□□□ -0.32
HDAC6-227ENST00000485102 PRAMEF33A0A0G2JMD5 474 aa13.07□□□□□ -0.32
HDAC6-227ENST00000485102 SMTNL1A8MU46 457 aa13.07□□□□□ -0.32
HDAC6-227ENST00000485102 C9orf172C9J069 976 aa13.07□□□□□ -0.32
HDAC6-227ENST00000485102 CCP110O43303 1012 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms