RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 A8MX80 341 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 AP3B1O00203 1094 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 AXIN1O15169 862 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 TP73O15350 636 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 TRBC1P01850 177 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 PIRTP0C851 137 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 CYP2A6P11509 494 aaPredicted RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 HNF1BP35680 557 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 TPMTP51580 245 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 SESN2P58004 480 aaPredicted RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 SEMG2Q02383 582 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 CAV1Q03135 178 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 CSTF1Q05048 431 aaKnown RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 PTPRRQ15256 657 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 AGBL4Q5VU57 503 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 TSSK4Q6SA08 328 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 CAND1Q86VP6 1230 aaKnown RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 OR14C36Q8NHC7 312 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 BLOC1S5Q8TDH9 187 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 ART4Q93070 314 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 TPSD1Q9BZJ3 242 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 EPC1Q9H2F5 836 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 XAB2Q9HCS7 855 aaKnown RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 CD93Q9NPY3 652 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 PRMT8Q9NR22 394 aaPredicted RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 GDF3Q9NR23 364 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 BFARQ9NZS9 450 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 USP36Q9P275 1121 aaKnown RBP12.29□□□□□ -0.44
SDC1-206ENST00000482879 FZD4Q9ULV1 537 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 KMT2EQ8IZD2 1858 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 SDK1Q7Z5N4 2213 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 CAPN8A6NHC0 703 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 NEMP1O14524 444 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 AREL1O15033 823 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 SLC7A4O43246 635 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 GPR37L1O60883 481 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 ZNF217O75362 1048 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 AVILO75366 819 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 MLNP12872 115 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 OXTRP30559 389 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 HOXA6P31267 233 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 VIPR1P32241 457 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 NPY2RP49146 381 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 CARSP49589 748 aaKnown RBP12.28□□□□□ -0.44
SDC1-206ENST00000482879 TAS2R38P59533 333 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 ELP6Q0PNE2 266 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 MTM1Q13496 603 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 CUL1Q13616 776 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 HLTFQ14527 1009 aaKnown RBP eCLIP12.28□□□□□ -0.44
SDC1-206ENST00000482879 ERCC6LQ2NKX8 1250 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 TMEM31Q5JXX7 168 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 CERCAMQ5T4B2 595 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 DENND2CQ68D51 928 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 ZDHHC24Q6UX98 284 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 ZNF534Q76KX8 674 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 DPPA4Q7L190 304 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 FBXO25Q8TCJ0 367 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 RLN3Q8WXF3 142 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 FAM131CQ96AQ9 280 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 PWWP2AQ96N64 755 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 SERPINB12Q96P63 405 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 MCCC1Q96RQ3 725 aaPredicted RBP12.28□□□□□ -0.44
SDC1-206ENST00000482879 SRPK1Q96SB4 655 aaKnown RBP12.28□□□□□ -0.44
SDC1-206ENST00000482879 FRMD8Q9BZ67 464 aaPredicted RBP12.28□□□□□ -0.44
SDC1-206ENST00000482879 BTBD1Q9H0C5 482 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 ANKZF1Q9H8Y5 726 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 MAGEE1Q9HCI5 957 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 C11orf16Q9NQ32 467 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 HACD3Q9P035 362 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 B4GALT6Q9UBX8 382 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 CYP8B1Q9UNU6 501 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 ITM2BQ9Y287 266 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 SPO11Q9Y5K1 396 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 FADS3Q9Y5Q0 445 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 PLXND1Q9Y4D7 1925 aa12.28□□□□□ -0.44
SDC1-206ENST00000482879 SPAG17Q6Q759 2223 aa12.27□□□□□ -0.44
SDC1-206ENST00000482879 THADAQ6YHU6 1953 aa12.27□□□□□ -0.44
SDC1-206ENST00000482879 CUL9Q8IWT3 2517 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 A0A0U1RQS6 177 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 NPIPB15A6NHN6 443 aaPredicted RBP12.27□□□□□ -0.45
SDC1-206ENST00000482879 PRR33A8MZF0 331 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 SPINT1O43278 529 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 PLRG1O43660 514 aaKnown RBP12.27□□□□□ -0.45
SDC1-206ENST00000482879 AP1G1O43747 822 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 PCDH8O95206 1070 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 IGLV3-19P01714 112 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 MGAT1P26572 445 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 MMP12P39900 470 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 FNTBP49356 437 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 ARL4CP56559 192 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 DMWDQ09019 674 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 MSLNQ13421 630 aaPredicted RBP12.27□□□□□ -0.45
SDC1-206ENST00000482879 SEPT6Q14141 434 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 ARHGEF7Q14155 803 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 POU6F1Q14863 301 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 TMEM52BQ4KMG9 183 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 DNAJC21Q5F1R6 531 aaKnown RBP12.27□□□□□ -0.45
SDC1-206ENST00000482879 FNBP1LQ5T0N5 605 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 CRTC1Q6UUV9 634 aa12.27□□□□□ -0.45
SDC1-206ENST00000482879 TSPAN33Q86UF1 283 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms