RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SLC35F3Q8IY50 421 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 PELI3Q8N2H9 469 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 IFI44Q8TCB0 444 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 TSACCQ96A04 125 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-209ENST00000474432 OR1A2Q9Y585 309 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 PCDHGC4Q9Y5F7 938 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 RECQL5O94762 991 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-209ENST00000474432 TGM2P21980 687 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 DUSP3P51452 185 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-209ENST00000474432 HK3P52790 923 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 PPARDQ03181 441 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 IHHQ14623 411 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 NFATC4Q14934 902 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 PERM1Q5SV97 790 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 FAXCQ5TGI0 409 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 CBARPQ8N350 705 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-209ENST00000474432 NUDCD1Q96RS6 583 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 IL12RB2Q99665 862 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 MGME1Q9BQP7 344 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 PACSIN1Q9BY11 444 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 NOD2Q9HC29 1040 aa18.66■□□□□ 0.58
COL7A1-209ENST00000474432 TMEM110-MUSTN1A8MSY1 372 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 MYO1FO00160 1098 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 PCCBP05166 539 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 RENBPP51606 427 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 CDH6P55285 790 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 TAS2R40P59535 323 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 TRAF2Q12933 501 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 MTM1Q13496 603 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 PTPRRQ15256 657 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 C6orf132Q5T0Z8 1188 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 CFAP58Q5T655 872 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 EFL1Q7Z2Z2 1120 aaKnown RBP18.65■□□□□ 0.58
COL7A1-209ENST00000474432 CRELD1Q96HD1 420 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 SLC13A1Q9BZW2 595 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 RCOR3Q9P2K3 495 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-209ENST00000474432 B4GALT6Q9UBX8 382 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 AK5Q9Y6K8 562 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 PTPRQQ9UMZ3 2332 aa18.65■□□□□ 0.58
COL7A1-209ENST00000474432 KIF26BQ2KJY2 2108 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-209ENST00000474432 A0A1W2PNU3 283 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-209ENST00000474432 CPED1A4D0V7 1026 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 TMEM202A6NGA9 273 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 A8MX80 341 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 BRINP1O60477 761 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 TRIM23P36406 574 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 HSPA9P38646 679 aaKnown RBP18.64■□□□□ 0.57
COL7A1-209ENST00000474432 EIF2S3P41091 472 aaKnown RBP18.64■□□□□ 0.57
COL7A1-209ENST00000474432 MAXP61244 160 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 POLR2LP62875 67 aaKnown RBP18.64■□□□□ 0.57
COL7A1-209ENST00000474432 DPYSL3Q14195 570 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 ENPP7Q6UWV6 458 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 PDZD3Q86UT5 571 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 HID1Q8IV36 788 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 TEX26Q8N6G2 289 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 PCDH19Q8TAB3 1148 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 ZNF564Q8TBZ8 553 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-209ENST00000474432 PDXPQ96GD0 296 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 COQ10AQ96MF6 247 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 DNAJC7Q99615 494 aa18.64■□□□□ 0.57
COL7A1-209ENST00000474432 MFSD11O43934 449 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 SOCS5O75159 536 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 CSO75390 466 aaKnown RBP18.63■□□□□ 0.57
COL7A1-209ENST00000474432 PROSCO94903 275 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 ANXA6P08133 673 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 LHCGRP22888 699 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 ITPKBP27987 946 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 SRP54P61011 504 aaKnown RBP18.63■□□□□ 0.57
COL7A1-209ENST00000474432 ZNF235Q14590 738 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 PAFAH1B3Q15102 231 aaKnown RBP18.63■□□□□ 0.57
COL7A1-209ENST00000474432 NR0B2Q15466 257 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 CNGA3Q16281 694 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 SLC18A3Q16572 532 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 NCBP2-AS2Q69YL0 99 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 ATPAF2Q8N5M1 289 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 SNIP1Q8TAD8 396 aaKnown RBP18.63■□□□□ 0.57
COL7A1-209ENST00000474432 MAPK15Q8TD08 544 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 OR1E3Q8WZA6 343 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 WDR92Q96MX6 357 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 LGR4Q9BXB1 951 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 FGF22Q9HCT0 170 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 NCKIPSDQ9NZQ3 722 aa18.63■□□□□ 0.57
COL7A1-209ENST00000474432 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.63■□□□□ 0.57
COL7A1-209ENST00000474432 RASGRP1O95267 797 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 HOXC4P09017 264 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-209ENST00000474432 ELFN1P0C7U0 828 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 BLKP51451 505 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 KIAA1024LP59773 190 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 GALNT2Q10471 571 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 KRT81Q14533 505 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 TCEA2Q15560 299 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 ISXQ2M1V0 245 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 MARC1Q5VT66 337 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 CRTC1Q6UUV9 634 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 FSTL5Q8N475 847 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-209ENST00000474432 MAML1Q92585 1016 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 FAF2Q96CS3 445 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 SMIM14Q96QK8 99 aa18.62■□□□□ 0.57
COL7A1-209ENST00000474432 RBM15Q96T37 977 aaKnown RBP eCLIP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms