RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 RNF135Q8IUD6 432 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 CYP4X1Q8N118 509 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 TERB1Q8NA31 727 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 ACMSDQ8TDX5 336 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 MZB1Q8WU39 189 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PDCD6IPQ8WUM4 868 aaKnown RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 NXPE3Q969Y0 559 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 ZFYVE19Q96K21 471 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 RBBP8Q99708 897 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 KXD1Q9BQD3 176 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 SELENOSQ9BQE4 189 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 OSBPL1AQ9BXW6 950 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 CIPCQ9C0C6 399 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 MFSD1Q9H3U5 465 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 NLE1Q9NVX2 485 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PHTF1Q9UMS5 762 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 USP15Q9Y4E8 981 aaPredicted RBP12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PCDHB9Q9Y5E1 797 aa12.89□□□□□ -0.35
VPS13D-205ENST00000473099 PLXNB3Q9ULL4 1909 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 TRIM49D1C9J1S8 452 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 ANHXE9PGG2 379 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 TRAFD1O14545 582 aaPredicted RBP12.88□□□□□ -0.35
VPS13D-205ENST00000473099 NPC1O15118 1278 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 RPP40O75818 363 aaKnown RBP12.88□□□□□ -0.35
VPS13D-205ENST00000473099 VAPBO95292 243 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PDHA1P08559 390 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 GDI1P31150 447 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 GJA4P35212 333 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 ARCN1P48444 511 aaKnown RBP12.88□□□□□ -0.35
VPS13D-205ENST00000473099 LIMK2P53671 638 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PARM1Q6UWI2 310 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 STRA8Q7Z7C7 330 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 C12orf40Q86WS4 652 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 CAMK1DQ8IU85 385 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 HCAR2Q8TDS4 363 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 FGF14Q92915 247 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PTPRN2Q92932 1015 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 CENPTQ96BT3 561 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 ECHDC3Q96DC8 303 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 SGSM3Q96HU1 749 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 MRGPRX3Q96LB0 322 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 NSMCE3Q96MG7 304 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF778Q96MU6 729 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 HEPHQ9BQS7 1158 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PLA2G2FQ9BZM2 168 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 TNKS2Q9H2K2 1166 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 SUV39H2Q9H5I1 410 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 IARS2Q9NSE4 1012 aaKnown RBP12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PSD3Q9NYI0 1048 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 NKIRAS1Q9NYS0 192 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 SLCO3A1Q9UIG8 710 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PPIL1Q9Y3C6 166 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 ATG2BQ96BY7 2078 aa12.88□□□□□ -0.35
VPS13D-205ENST00000473099 PLXNA2O75051 1894 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 A0A0J9YYE9 177 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 FAM47DPA6NHR8 397 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 PFDN6O15212 129 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 TRBC1P01850 177 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 APODP05090 189 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 MDH1P40925 334 aaKnown RBP12.87□□□□□ -0.35
VPS13D-205ENST00000473099 GRIA2P42262 883 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 ATP1A2P50993 1020 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF140P52738 457 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-205ENST00000473099 SMAD4Q13485 552 aaKnown RBP12.87□□□□□ -0.35
VPS13D-205ENST00000473099 HTR4Q13639 388 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 GRM2Q14416 872 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 MRNIPQ6NTE8 343 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 NEPROQ6NW34 567 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 BRAT1Q6PJG6 821 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 DPY19L3Q6ZPD9 716 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 Q6ZVU0 165 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 USP45Q70EL2 814 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 UNC5BQ8IZJ1 945 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 PLCD3Q8N3E9 789 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 PHTF2Q8N3S3 785 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 OR13J1Q8NGT2 312 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 GPR150Q8NGU9 434 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 CSGALNACT1Q8TDX6 532 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 FRS2Q8WU20 508 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 PIH1D2Q8WWB5 315 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 CABS1Q96KC9 395 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 LYSMD1Q96S90 227 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 CAPS2Q9BXY5 557 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 RHOJQ9H4E5 214 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 ZDHHC6Q9H6R6 413 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 BRD9Q9H8M2 597 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 KCNK9Q9NPC2 374 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 TRPV5Q9NQA5 729 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 MKS1Q9NXB0 559 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 CORO1CQ9ULV4 474 aaPredicted RBP12.87□□□□□ -0.35
VPS13D-205ENST00000473099 PKP3Q9Y446 797 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 VCANP13611 3396 aa12.87□□□□□ -0.35
VPS13D-205ENST00000473099 EDDM13A0A1B0GTR0 161 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 TMEM120BA0PK00 339 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 CAPN8A6NHC0 703 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 OTOL1A6NHN0 477 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 SRRM3A6NNA2 597 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 H7C0S8 307 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 TM9SF1O15321 606 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 STX7O15400 261 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms