RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CDH19Q9H159 772 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 SEMA6AQ9H2E6 1030 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ABCG2Q9UNQ0 655 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PLCL2Q9UPR0 1127 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 BTN3A1O00481 513 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 RHOCP08134 193 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 RARAP10276 462 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 NPTX2P47972 431 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 IST1P53990 364 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 GRB10Q13322 594 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 E2F2Q14209 437 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 MED22Q15528 200 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 SMAD1Q15797 465 aaKnown RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF606Q8WXB4 792 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 RUSC1Q9BVN2 902 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF180Q9UJW8 692 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 CDH7Q9ULB5 785 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PRODHO43272 600 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 MVKQ03426 396 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ANO7Q6IWH7 933 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 AFTPHQ6ULP2 937 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF410Q86VK4 478 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 GATAD2AQ86YP4 633 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF451Q9Y4E5 1061 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 FAM205AQ6ZU69 1335 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PLOD2O00469 737 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 CCNYL2Q5T2Q4 361 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 CHST15Q7LFX5 561 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF614Q8N883 585 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 MGME1Q9BQP7 344 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 CDHR5Q9HBB8 845 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 XPNPEP3Q9NQH7 507 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PCDHGB1Q9Y5G3 927 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 NRP2O60462 931 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 NOL4O94818 638 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 IGSF6O95976 241 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ENO2P09104 434 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 FDPSP14324 419 aaKnown RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ATF4P18848 351 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 CCNCP24863 283 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 MBTD1Q05BQ5 628 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 GRSF1Q12849 480 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 GLB1L3Q8NCI6 653 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 CSGALNACT1Q8TDX6 532 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 APBA2Q99767 749 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 ARL15Q9NXU5 204 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 AP3D1O14617 1153 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 DBTP11182 482 aaKnown RBP13.36□□□□□ -0.27
COL6A3-209ENST00000472056 FGFR3P22607 806 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 F8A1P23610 371 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PFKFB4Q16877 469 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 TMC8Q8IU68 726 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 SELENOMQ8WWX9 145 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 YME1L1Q96TA2 773 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 SEMA3GQ9NS98 782 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 VPS28Q9UK41 221 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 RAB23Q9ULC3 237 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PLLPQ9Y342 182 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 PCDHGB6Q9Y5F9 930 aa13.36□□□□□ -0.27
COL6A3-209ENST00000472056 RHOAP61586 193 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 MGAT5BQ3V5L5 792 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 FAM153CQ494X1 144 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 UNC5BQ8IZJ1 945 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 UBA3Q8TBC4 463 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 SLC4A5Q9BY07 1137 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 ETNK2Q9NVF9 386 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF224Q9NZL3 707 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 MTA2O94776 668 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF806P0C7X5 589 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 PIK3R6Q5UE93 754 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 PGBD2Q6P3X8 592 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 ANKRA2Q9H9E1 313 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 INTS7Q9NVH2 962 aaKnown RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 GRIP1Q9Y3R0 1128 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 NDUFB5O43674 189 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 EDF1O60869 148 aaKnown RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 PNLIPRP1P54315 467 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 MTMR2Q13614 643 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 GRM3Q14832 879 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 DUPD1Q68J44 220 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 BAP1Q92560 729 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 TAMM41Q96BW9 452 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF347Q96SE7 839 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 FADS2P1A8MWK0 482 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 NTRK1P04629 796 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 CDH5P33151 784 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 KLHL22Q53GT1 634 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 TDRPQ86YL5 185 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 SLC9A9Q8IVB4 645 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 C11orf24Q96F05 449 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-209ENST00000472056 FNDC11Q9BVV2 318 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 EVA1BQ9NVM1 165 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 CD163L1Q9NR16 1453 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 FAAP100Q0VG06 881 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 OR8H1Q8NGG4 311 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 NODALQ96S42 347 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 XKR8Q9H6D3 395 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 LYVE1Q9Y5Y7 322 aa13.35□□□□□ -0.27
COL6A3-209ENST00000472056 GCATO75600 419 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms