RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	NDUFB4	O95168	129 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	IPO7	O95373	1038 aa	Known RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	TOMM40	O96008	361 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CYP1A2	P05177	515 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	PSG1	P11464	419 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	HOXB2	P14652	356 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	ALOX12	P18054	663 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CD58	P19256	250 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	GPT	P24298	496 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	HOXD13	P35453	343 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	THPO	P40225	353 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF81	P51508	661 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	P2RX3	P56373	397 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	PRAME	P78395	509 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	TRAF1	Q13077	416 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	ITGAD	Q13349	1161 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	PDE1C	Q14123	709 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	GPR18	Q14330	331 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	FRG1	Q14331	258 aa	Known RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	DRAP1	Q14919	205 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	ARHGEF6	Q15052	776 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	MED22	Q15528	200 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	ODF3L2	Q3SX64	289 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SOWAHC	Q53LP3	525 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CXorf66	Q5JRM2	361 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	C6orf141	Q5SZD1	244 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	OTUD1	Q5VV17	481 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	TTI2	Q6NXR4	508 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	TSSK4	Q6SA08	328 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	COLCA1	Q6ZS62	124 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044		Q6ZSV7	163 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	IRF2BP2	Q7Z5L9	587 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CTU1	Q7Z7A3	348 aa	Known RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	PALB2	Q86YC2	1186 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SLC35F3	Q8IY50	421 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	PDILT	Q8N807	584 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	HUS1B	Q8NHY5	278 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SCFD2	Q8WU76	684 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SGCD	Q92629	289 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	VOPP1	Q96AW1	172 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	NSUN4	Q96CB9	384 aa	Known RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	HMCES	Q96FZ2	354 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	TMEM68	Q96MH6	324 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	TKTL2	Q9H0I9	626 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SYNC	Q9H7C4	482 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	KIF9	Q9HAQ2	790 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CLK4	Q9HAZ1	481 aa	Known RBP	3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CYSLTR2	Q9NS75	346 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	SLC45A1	Q9Y2W3	748 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	CACNA1I	Q9P0X4	2223 aa		3.95	□□□□□ -1.78
PTCD3-209	ENST00000472044	RPS10-NUDT3	A0A1W2PQS6	291 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	FRMD3	A2A2Y4	597 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044		A6NCN8	305 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	BECN2	A8MW95	431 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044		A8MZ25	164 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	MYO1G	B0I1T2	1018 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	VWA5A	O00534	786 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	SPRY3	O43610	288 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	OR2C1	O95371	312 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	LDHC	P07864	332 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	CBSL	P0DN79	551 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	RARG	P13631	454 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	CBS	P35520	551 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	PSMB10	P40306	273 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	RFX5	P48382	616 aa	Predicted RBP	3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	ENTPD1	P49961	510 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	RAD23B	P54727	409 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	ROR2	Q01974	943 aa	Known RBP	3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	CEBPZ	Q03701	1054 aa	Known RBP	3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	AIMP2	Q13155	320 aa	Known RBP	3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	CRYM	Q14894	314 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	COL28A1	Q2UY09	1125 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	DNTTIP2	Q5QJE6	756 aa	Known RBP	3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	KLHL35	Q6PF15	583 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	LCTL	Q6UWM7	567 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	TECPR1	Q7Z6L1	1165 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	WDR63	Q8IWG1	891 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	TTC39C	Q8N584	583 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZBTB2	Q8N680	514 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	SCCPDH	Q8NBX0	429 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	RSRC1	Q96IZ7	334 aa	Known RBP	3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	APOLD1	Q96LR9	279 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	WDFY2	Q96P53	400 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	SLC29A3	Q9BZD2	475 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	PDZD7	Q9H5P4	517 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	WDR26	Q9H7D7	661 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	POLR1B	Q9H9Y6	1135 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	GPR34	Q9UPC5	381 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	CEPT1	Q9Y6K0	416 aa		3.94	□□□□□ -1.78
PTCD3-209	ENST00000472044	TMEM202	A6NGA9	273 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM90A8P	A6NJQ4	464 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	AGAP14	A8MT82	685 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	SNAP23	O00161	211 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	AP3D1	O14617	1153 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	RGS14	O43566	566 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	GFPT2	O94808	682 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM90A13P	P0C7W8	464 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	FAM90A24P	P0C7X0	464 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	CDK4	P11802	303 aa		3.93	□□□□□ -1.78
PTCD3-209	ENST00000472044	ZNF182	P17025	639 aa	Predicted RBP	3.93	□□□□□ -1.78

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