RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 HSPA9P38646 679 aaKnown RBP17.88■□□□□ 0.45
COL7A1-205ENST00000465238 MMP13P45452 471 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 CSNK1DP48730 415 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 ADCY2Q08462 1091 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 NSUN2Q08J23 767 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL7A1-205ENST00000465238 ZNF211Q13398 564 aaPredicted RBP17.88■□□□□ 0.45
COL7A1-205ENST00000465238 ILKQ13418 452 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 SRLQ86TD4 932 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 REXO1L1PQ8IX06 675 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 TMEM145Q8NBT3 493 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 FATE1Q969F0 183 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 KLHDC7BQ96G42 594 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 LGMNQ99538 433 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 SCUBE2Q9NQ36 999 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 HAUS2Q9NVX0 235 aa17.88■□□□□ 0.45
COL7A1-205ENST00000465238 SAE1Q9UBE0 346 aaPredicted RBP17.88■□□□□ 0.45
COL7A1-205ENST00000465238 BAHCC1Q9P281 2608 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 A0A1W2PQU0 124 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 SLC31A1O15431 190 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 CCNB1P14635 433 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 JUPP14923 745 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 GKP32189 559 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 SCNN1BP51168 640 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 PPIDQ08752 370 aaKnown RBP17.87■□□□□ 0.45
COL7A1-205ENST00000465238 AP1B1Q10567 949 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 GRM3Q14832 879 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 COL28A1Q2UY09 1125 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 AADACL2Q6P093 401 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 ERN2Q76MJ5 926 aaKnown RBP17.87■□□□□ 0.45
COL7A1-205ENST00000465238 HORMAD1Q86X24 394 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 LRRN4Q8WUT4 740 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 ARRDC3Q96B67 414 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 HAUS1Q96CS2 278 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 OSBPL1AQ9BXW6 950 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 HDAC8Q9BY41 377 aa17.87■□□□□ 0.45
COL7A1-205ENST00000465238 CPEB1Q9BZB8 566 aaKnown RBP17.87■□□□□ 0.45
COL7A1-205ENST00000465238 TRPM6Q9BX84 2022 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 GOLGA6L9A6NEM1 432 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 APOC4-APOC2K7ER74 178 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 INSIG1O15503 277 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 APOC2P02655 101 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 UGT2B4P06133 528 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 THEGLP0DJG4 465 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 PECAM1P16284 738 aaPredicted RBP17.86■□□□□ 0.45
COL7A1-205ENST00000465238 PRLRP16471 622 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 CKMT2P17540 419 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 AKT2P31751 481 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 RGRP47804 291 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 ITKQ08881 620 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 ZNF284Q2VY69 593 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 ZNF805Q5CZA5 627 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 SEL1L2Q5TEA6 688 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 GDPD4Q6W3E5 623 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 TEX26Q8N6G2 289 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 MAML1Q92585 1016 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 NXPE2Q96DL1 559 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 OLFM3Q96PB7 478 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 NT5MQ9NPB1 228 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 RBM22Q9NW64 420 aaKnown RBP eCLIP17.86■□□□□ 0.45
COL7A1-205ENST00000465238 PYCARDQ9ULZ3 195 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 CA5BQ9Y2D0 317 aa17.86■□□□□ 0.45
COL7A1-205ENST00000465238 FASNP49327 2511 aaKnown RBP17.86■□□□□ 0.45
COL7A1-205ENST00000465238 ANKRD36A6QL64 1941 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 MUSKO15146 869 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 KIF5CO60282 957 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 PCDH8O95206 1070 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 HOXB3P14651 431 aaPredicted RBP17.85■□□□□ 0.45
COL7A1-205ENST00000465238 HNRNPA2B1P22626 353 aaKnown RBP17.85■□□□□ 0.45
COL7A1-205ENST00000465238 ITGB7P26010 798 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 MSNP26038 577 aaKnown RBP17.85■□□□□ 0.45
COL7A1-205ENST00000465238 FBXL19Q6PCT2 694 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 PDZD3Q86UT5 571 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 PAF1Q8N7H5 531 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 FAM174AQ8TBP5 190 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 TFB1MQ8WVM0 346 aaKnown RBP17.85■□□□□ 0.45
COL7A1-205ENST00000465238 HNRNPLLQ8WVV9 542 aaKnown RBP17.85■□□□□ 0.45
COL7A1-205ENST00000465238 KLK6Q92876 244 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 KLHL32Q96NJ5 620 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 TUBGCP5Q96RT8 1024 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 HERPUD2Q9BSE4 406 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 ATP13A3Q9H7F0 1226 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 AMACRQ9UHK6 382 aa17.85■□□□□ 0.45
COL7A1-205ENST00000465238 TDRD6O60522 2096 aaKnown RBP17.84■□□□□ 0.45
COL7A1-205ENST00000465238 MYLKQ15746 1914 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 A0A087WV48 116 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.84■□□□□ 0.45
COL7A1-205ENST00000465238 C16orf96A6NNT2 1141 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 KCNK1O00180 336 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 RNF103O00237 685 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 SDC3O75056 442 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 JCHAINP01591 159 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 SERPINA4P29622 427 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 NEK3P51956 506 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 MAXP61244 160 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 AP1S1P61966 158 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 BCL2L1Q07817 233 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 PROX2Q3B8N5 592 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 RALGPS1Q5JS13 557 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 ZNF569Q5MCW4 686 aa17.84■□□□□ 0.45
COL7A1-205ENST00000465238 CFAP58Q5T655 872 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms