RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CELF6Q96J87 481 aaKnown RBP22.76■■□□□ 1.23
USP4-208ENST00000464168 TUBGCP5Q96RT8 1024 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 CHMP5Q9NZZ3 219 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 ACSL6Q9UKU0 697 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 UNC13CQ8NB66 2214 aa22.76■■□□□ 1.23
USP4-208ENST00000464168 ANKRD62A6NC57 917 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 TMEM202A6NGA9 273 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 TPM2P07951 284 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 CSNK1DP48730 415 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 NDST2P52849 883 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 OGDHQ02218 1023 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 TGIF1Q15583 401 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 CFAP58Q5T655 872 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 SRLQ86TD4 932 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 JAMLQ86YT9 394 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 CCNJLQ8IV13 435 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 Q8N9G6 341 aaPredicted RBP22.75■■□□□ 1.23
USP4-208ENST00000464168 TSEN2Q8NCE0 465 aaKnown RBP22.75■■□□□ 1.23
USP4-208ENST00000464168 FUBP1Q96AE4 644 aaKnown RBP22.75■■□□□ 1.23
USP4-208ENST00000464168 TMEM74Q96NL1 305 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 AGPAT1Q99943 283 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 FGF22Q9HCT0 170 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 SEPT11Q9NVA2 429 aaKnown RBP22.75■■□□□ 1.23
USP4-208ENST00000464168 FANCLQ9NW38 375 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 GPATCH2LQ9NWQ4 482 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 APPL1Q9UKG1 709 aa22.75■■□□□ 1.23
USP4-208ENST00000464168 CFAP69A5D8W1 941 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 RECQL5O94762 991 aaPredicted RBP22.74■■□□□ 1.23
USP4-208ENST00000464168 HTR7P34969 479 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 PAPOLAP51003 745 aaKnown RBP22.74■■□□□ 1.23
USP4-208ENST00000464168 TPI1P60174 286 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 ZFP36L1Q07352 338 aaKnown RBP22.74■■□□□ 1.23
USP4-208ENST00000464168 RALGDSQ12967 914 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 CERCAMQ5T4B2 595 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 SFTPA2Q8IWL1 248 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 EXD3Q8N9H8 876 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 FAM46DQ8NEK8 389 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 OR56A4Q8NGH8 313 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 COL26A1Q96A83 441 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 SLC39A8Q9C0K1 460 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 ATP13A3Q9H7F0 1226 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 WDR70Q9NW82 654 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 DONSONQ9NYP3 566 aa22.74■■□□□ 1.23
USP4-208ENST00000464168 PYCARD-AS1I3L0S3 204 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 NVLO15381 856 aaKnown RBP22.73■■□□□ 1.23
USP4-208ENST00000464168 GLB1P16278 677 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 COPB1P53618 953 aaKnown RBP22.73■■□□□ 1.23
USP4-208ENST00000464168 KIAA1024LP59773 190 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 SRSF6Q13247 344 aaKnown RBP22.73■■□□□ 1.23
USP4-208ENST00000464168 LIPIQ6XZB0 460 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 TAF8Q7Z7C8 310 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 NEK11Q8NG66 645 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 ECHDC3Q96DC8 303 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 MRPL40Q9NQ50 206 aaKnown RBP22.73■■□□□ 1.23
USP4-208ENST00000464168 PISDQ9UG56 409 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 LOXL2Q9Y4K0 774 aa22.73■■□□□ 1.23
USP4-208ENST00000464168 LRP4O75096 1905 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 CACNB4O00305 520 aaPredicted RBP22.72■■□□□ 1.23
USP4-208ENST00000464168 TNFRSF10CO14798 259 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 PALMO75781 387 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 HOXC4P09017 264 aaPredicted RBP22.72■■□□□ 1.23
USP4-208ENST00000464168 JMJD7P0C870 316 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 GM2AP17900 193 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 SERPINA4P29622 427 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 TRIM23P36406 574 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 CA9Q16790 459 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 DCUN1D2Q6PH85 259 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 MCOLN2Q8IZK6 566 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 PCMTD1Q96MG8 357 aaPredicted RBP22.72■■□□□ 1.23
USP4-208ENST00000464168 TMEM168Q9H0V1 697 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 RNF215Q9Y6U7 377 aa22.72■■□□□ 1.23
USP4-208ENST00000464168 ARHGAP42A6NI28 874 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 LGALS16A8MUM7 142 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 PNLIPP16233 465 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 HLTFQ14527 1009 aaKnown RBP eCLIP22.71■■□□□ 1.23
USP4-208ENST00000464168 LINC00303Q3SY05 128 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 AFMIDQ63HM1 303 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 ACAD10Q6JQN1 1059 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 TMPRSS9Q7Z410 1059 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 SPRED1Q7Z699 444 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 ARHGAP12Q8IWW6 846 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 NSMCE3Q96MG7 304 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 LGR4Q9BXB1 951 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 LRIT1Q9P2V4 623 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 LIMA1Q9UHB6 759 aaKnown RBP22.71■■□□□ 1.23
USP4-208ENST00000464168 AP4E1Q9UPM8 1137 aa22.71■■□□□ 1.23
USP4-208ENST00000464168 NAV2Q8IVL1 2488 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 AGRPO00253 132 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 EEF2KO00418 725 aaKnown RBP22.7■■□□□ 1.22
USP4-208ENST00000464168 SLC28A2O43868 658 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 ELFN1P0C7U0 828 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 ITIH1P19827 911 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 BCL2L1Q07817 233 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 NSUN2Q08J23 767 aaKnown RBP eCLIP22.7■■□□□ 1.22
USP4-208ENST00000464168 C14orf28Q4W4Y0 310 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 USP53Q70EK8 1073 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 DPPA4Q7L190 304 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 PELI3Q8N2H9 469 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 ARFGAP1Q8N6T3 406 aa22.7■■□□□ 1.22
USP4-208ENST00000464168 CCL4L1Q8NHW4 92 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms