RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SEMA3CQ99985 751 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 DUSP23Q9BVJ7 150 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 NLGN3Q9NZ94 848 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 DTLQ9NZJ0 730 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 CSNK1G3Q9Y6M4 447 aa23.1■■□□□ 1.29
PTPN4-208ENST00000460289 C3orf70A6NLC5 250 aaPredicted RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 FFAR2O15552 330 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 RECQL5O94762 991 aaPredicted RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 KRT1P04264 644 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 KRT10P13645 584 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 HTR1BP28222 390 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 ACADVLP49748 655 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 SLC10A2Q12908 348 aaPredicted RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 TRAF2Q12933 501 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 EIF2B5Q13144 721 aaKnown RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 INPP5AQ14642 412 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 PROX2Q3B8N5 592 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 ARMC12Q5T9G4 340 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 SLC9A4Q6AI14 798 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 CCNI2Q6ZMN8 369 aaPredicted RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 MACC1Q6ZN28 852 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 CCDC13Q8IYE1 715 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 TMEM121BQ9BXQ6 578 aaPredicted RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 KCTD5Q9NXV2 234 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 B4GALT6Q9UBX8 382 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 ALG6Q9Y672 507 aa23.09■■□□□ 1.29
PTPN4-208ENST00000460289 EPN1Q9Y6I3 576 aaPredicted RBP23.09■■□□□ 1.29
PTPN4-208ENST00000460289 A0A0A6YYK5 440 aaPredicted RBP23.08■■□□□ 1.29
PTPN4-208ENST00000460289 TMEM8BA6NDV4 472 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 APOL1O14791 398 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 PGLSO95336 258 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 IPO7O95373 1038 aaKnown RBP23.08■■□□□ 1.29
PTPN4-208ENST00000460289 CYP2A6P11509 494 aaPredicted RBP23.08■■□□□ 1.29
PTPN4-208ENST00000460289 TNNT1P13805 278 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 MTM1Q13496 603 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 SMAD1Q15797 465 aaKnown RBP23.08■■□□□ 1.29
PTPN4-208ENST00000460289 ST3GAL2Q16842 350 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 ALG1LQ6GMV1 187 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 DHRS13Q6UX07 377 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 KDM7AQ6ZMT4 941 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 PLD5Q8N7P1 536 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 ZNF548Q8NEK5 533 aaPredicted RBP23.08■■□□□ 1.29
PTPN4-208ENST00000460289 ATL2Q8NHH9 583 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 TPCN2Q8NHX9 752 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 RNF25Q96BH1 459 aaPredicted RBP23.08■■□□□ 1.29
PTPN4-208ENST00000460289 SCRN2Q96FV2 425 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 APOOQ9BUR5 198 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 SLC13A1Q9BZW2 595 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 SPASTQ9UBP0 616 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 KLF15Q9UIH9 416 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 HEY1Q9Y5J3 304 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 RAI2Q9Y5P3 530 aa23.08■■□□□ 1.29
PTPN4-208ENST00000460289 A8MX80 341 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 AQP9O43315 295 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 GIMD1P0DJR0 217 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 ACP1P24666 158 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 VIPR1P32241 457 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 BLKP51451 505 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 DAB2P98082 770 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 PPARDQ03181 441 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 PPIDQ08752 370 aaKnown RBP23.07■■□□□ 1.28
PTPN4-208ENST00000460289 ACOX1Q15067 660 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 FAXCQ5TGI0 409 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 TMPRSS12Q86WS5 348 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 RFX6Q8HWS3 928 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 CALR3Q96L12 384 aaKnown RBP23.07■■□□□ 1.28
PTPN4-208ENST00000460289 TBATAQ96M53 351 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 EVA1BQ9NVM1 165 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 PPIL1Q9Y3C6 166 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 HYOU1Q9Y4L1 999 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 TTLL3Q9Y4R7 772 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 ANKRD36A6QL64 1941 aa23.07■■□□□ 1.28
PTPN4-208ENST00000460289 ARID1BQ8NFD5 2236 aaPredicted RBP23.06■■□□□ 1.28
PTPN4-208ENST00000460289 K7ESM1 405 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 PSTPIP1O43586 416 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 NDUFA10O95299 355 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 PCCBP05166 539 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 CA4P22748 312 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 FECHP22830 423 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 NFATC4Q14934 902 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 PDK1Q15118 436 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 USP45Q70EL2 814 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 BZW1Q7L1Q6 419 aaKnown RBP23.06■■□□□ 1.28
PTPN4-208ENST00000460289 PHACTR4Q8IZ21 702 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 FAM181AQ8N9Y4 354 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 KDF1Q8NAX2 398 aaPredicted RBP23.06■■□□□ 1.28
PTPN4-208ENST00000460289 LMX1AQ8TE12 382 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 LGMNQ99538 433 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 BRD8Q9H0E9 1235 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 USP29Q9HBJ7 922 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 APOBEC3BQ9UH17 382 aaKnown RBP23.06■■□□□ 1.28
PTPN4-208ENST00000460289 SHROOM3Q8TF72 1996 aa23.06■■□□□ 1.28
PTPN4-208ENST00000460289 TPP1O14773 563 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 FZD6O60353 706 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 JCHAINP01591 159 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 DUSP3P51452 185 aaPredicted RBP23.05■■□□□ 1.28
PTPN4-208ENST00000460289 DSC2Q02487 901 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 ARHGEF7Q14155 803 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 TFDP2Q14188 446 aa23.05■■□□□ 1.28
PTPN4-208ENST00000460289 PRRT3Q5FWE3 981 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms