RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PIP4K2CQ8TBX8 421 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 MARVELD3Q96A59 401 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 RMDN1Q96DB5 314 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 EBNA1BP2Q99848 306 aaKnown RBP11.04□□□□□ -0.64
SCN9A-205ENST00000454569 GABRG3Q99928 467 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 FAM129AQ9BZQ8 928 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 MKRN2Q9H000 416 aaKnown RBP11.04□□□□□ -0.64
SCN9A-205ENST00000454569 ATP13A3Q9H7F0 1226 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 WNT16Q9UBV4 365 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 ARL5AQ9Y689 179 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 MAD1L1Q9Y6D9 718 aa11.04□□□□□ -0.64
SCN9A-205ENST00000454569 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 GOLGA6CA6NDK9 693 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 GOLGA6BA6NDN3 693 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SDR42E2A6NKP2 422 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SPINT1O43278 529 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 LDB2O43679 373 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SASH3O75995 380 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ACSL3O95573 720 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PDGFBP01127 241 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 C1QAP02745 245 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SHBGP04278 402 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 GOLGA6DP0CG33 693 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SERPINA4P29622 427 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 NTSR1P30989 418 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 HNF1BP35680 557 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 RECQLP46063 649 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 NPY2RP49146 381 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 STARD6P59095 220 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SARNPP82979 210 aaKnown RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 CAMK2GQ13555 558 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SLC29A2Q14542 456 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 CDKN3Q16667 212 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PREPLQ4J6C6 727 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ARMC12Q5T9G4 340 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 TRMT10BQ6PF06 316 aaKnown RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 UNC5AQ6ZN44 842 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PARS2Q7L3T8 475 aaKnown RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 TSPAN33Q86UF1 283 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 LAPTM4BQ86VI4 370 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 RELL1Q8IUW5 271 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 OR2W6PQ8NHA6 318 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 BLOC1S5Q8TDH9 187 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PYROXD1Q8WU10 500 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 MFSD3Q96ES6 412 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 CFAP36Q96G28 342 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 TUBGCP5Q96RT8 1024 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 FOXP3Q9BZS1 431 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 LMAN1LQ9HAT1 526 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 CD93Q9NPY3 652 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SMYD2Q9NRG4 433 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 GOLGA6AQ9NYA3 693 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SUN2Q9UH99 717 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 GGT7Q9UJ14 662 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PLXNA2O75051 1894 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 A0A0J9YYE9 177 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ZCWPW2A0A1B0GU75 182 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 NPIPB15A6NHN6 443 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 GOLGA8CPA6NN73 597 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 C16orf96A6NNT2 1141 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 KPNA3O00505 521 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 EIF3HO15372 352 aaKnown RBP eCLIP11.03□□□□□ -0.642e-6■■■■□ 19.3
SCN9A-205ENST00000454569 RIPK2O43353 540 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SOCS5O75159 536 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 TTC4O95801 387 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 CPP00450 1065 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 IL1BP01584 269 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 TRBC1P01850 177 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 FGF1P05230 155 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 HLA-DPA1P20036 260 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ELAVL3Q14576 367 aaKnown RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ESRP1Q6NXG1 681 aaKnown RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 CASC4Q6P4E1 433 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ZNF852Q6ZMS4 543 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 RFLNAQ6ZTI6 216 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 TTC30BQ8N4P2 665 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 MREGQ8N565 214 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 FLCNQ8NFG4 579 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 OR13C4Q8NGS5 318 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 UBLCP1Q8WVY7 318 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 STAMBPL1Q96FJ0 436 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ZNF641Q96N77 438 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PPP1R2P1Q96PQ5 205 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 FUT8Q9BYC5 575 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 FRMD8Q9BZ67 464 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 LTB4R2Q9NPC1 389 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 BFARQ9NZS9 450 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SLC17A6Q9P2U8 582 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SERGEFQ9UGK8 458 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ZC3H7BQ9UGR2 993 aaKnown RBP11.03□□□□□ -0.64
SCN9A-205ENST00000454569 FBXL21Q9UKT6 434 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 SLC8A2Q9UPR5 921 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 ITM2BQ9Y287 266 aa11.03□□□□□ -0.64
SCN9A-205ENST00000454569 PIKFYVEQ9Y2I7 2098 aa11.02□□□□□ -0.64
SCN9A-205ENST00000454569 CEP192Q8TEP8 1941 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 KANSL1LA0AUZ9 987 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 TSPAN11A1L157 253 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 MROH6A6NGR9 719 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 FAM170BA6NMN3 283 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms