RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 LRRD1A4D1F6 860 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 NEMP2A6NFY4 417 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 ARHGAP42A6NI28 874 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 ZNF487B1APH4 448 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 TRIM38O00635 465 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 RARAP10276 462 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 PYGMP11217 842 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 CLDN6P56747 220 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 CYP4F3Q08477 520 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 PDE1CQ14123 709 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 CYTH1Q15438 398 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 CA9Q16790 459 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 PROX2Q3B8N5 592 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 PPP6R3Q5H9R7 873 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 CFAP58Q5T655 872 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 OR4C6Q8NH72 309 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 ASB12Q8WXK4 309 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 LRRC19Q9H756 370 aa18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.17■□□□□ 0.5
SQSTM1-204ENST00000453046 SPTY2D1-AS1A0A0U1RR47 76 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 H3BM21 787 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 J3KR12 359 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 AREL1O15033 823 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 MMP20O60882 483 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 TM7SF2O76062 418 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 ACP1P24666 158 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 PAPOLAP51003 745 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 CAMK2BQ13554 666 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 GRM3Q14832 879 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 PDK2Q15119 407 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 DPYSL2Q16555 572 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 TAZQ16635 292 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 HES3Q5TGS1 186 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 RFX8Q6ZV50 586 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 PARGQ86W56 976 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 CCDC50Q8IVM0 306 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 DENND6BQ8NEG7 585 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 FAM71BQ8TC56 605 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 KCTD15Q96SI1 283 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 C1QTNF7Q9BXJ2 289 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 CPEB1Q9BZB8 566 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 SLC39A8Q9C0K1 460 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 DKK3Q9UBP4 350 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 LHX3Q9UBR4 397 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 RALYQ9UKM9 306 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 ANKRD11Q6UB99 2663 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 KNTC1P50748 2209 aa18.16■□□□□ 0.5
SQSTM1-204ENST00000453046 PKD1L2Q7Z442 2459 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 CTAGE15A4D2H0 777 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 DFFAO00273 331 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 PDE2AO00408 941 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 RIOK3O14730 519 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 INSIG1O15503 277 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 PRAMEF11O60813 436 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 SLU7O95391 586 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 PIGNO95427 931 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 FGGP02679 453 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 CSF2P04141 144 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 CTAGE8P0CG41 777 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 TIMP2P16035 220 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 ERCC2P18074 760 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 ARSEP51690 589 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 THOP1P52888 689 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 ELP6Q0PNE2 266 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 FZD2Q14332 565 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 TFDP3Q5H9I0 405 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 SPOCD1Q6ZMY3 1216 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 CTAGE6Q86UF2 777 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 SLC13A5Q86YT5 568 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 MAP7D3Q8IWC1 876 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 CTAGE4Q8IX94 777 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 PAF1Q8N7H5 531 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 MAIP1Q8WWC4 291 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 RAPGEF5Q92565 580 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 HSPH1Q92598 858 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 VOPP1Q96AW1 172 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 MS4A14Q96JA4 679 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 KLF6Q99612 283 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 ZNF670Q9BS34 389 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 WRAP53Q9BUR4 548 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 CARD6Q9BX69 1037 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 OSBPL8Q9BZF1 889 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 SUV39H2Q9H5I1 410 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 SP110Q9HB58 689 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 GPR27Q9NS67 375 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 NLGN3Q9NZ94 848 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 RCOR3Q9P2K3 495 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 EFR3BQ9Y2G0 817 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 RAXQ9Y2V3 346 aa18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 ARID1BQ8NFD5 2236 aaPredicted RBP18.15■□□□□ 0.5
SQSTM1-204ENST00000453046 hCG_1818297A0A087WSY0 165 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 GOLGA6L10A0A0M3HER8 536 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 C3orf70A6NLC5 250 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 SCAMP1O15126 338 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 SPINT1O43278 529 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 NME1P15531 152 aaKnown RBP18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 ITIH2P19823 946 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 KDELR1P24390 212 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 CDKN2BP42772 138 aa18.14■□□□□ 0.49
SQSTM1-204ENST00000453046 SUOXP51687 545 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms