RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 BBS12Q6ZW61 710 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 OXR1Q8N573 874 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 ACTRT1Q8TDG2 376 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 LRIG1Q96JA1 1093 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 CNDP2Q96KP4 475 aaKnown RBP17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 GDAP1L1Q96MZ0 367 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 CARD6Q9BX69 1037 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 LHX3Q9UBR4 397 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 UBA2Q9UBT2 640 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 CDC23Q9UJX2 597 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 ZMIZ1Q9ULJ6 1067 aa17.21■□□□□ 0.35
PRPF40A-204ENST00000450303 FAM221BA6H8Z2 402 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 YKT6O15498 198 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 AP1G1O43747 822 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 FGGP02679 453 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 NR2C2P49116 596 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 NDST2P52849 883 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 DYNLT1P63172 113 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 RAD51Q06609 339 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 CKAP4Q07065 602 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 DNAJC3Q13217 504 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 PAFAH1B3Q15102 231 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 LLGL1Q15334 1064 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 KIAA1161Q6NSJ0 714 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 KDM7AQ6ZMT4 941 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 Q6ZSR6 202 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 TTC7BQ86TV6 843 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 COG1Q8WTW3 980 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 CASKIN2Q8WXE0 1202 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 P3H4Q92791 437 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 BMFQ96LC9 184 aa17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 ARID1BQ8NFD5 2236 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-204ENST00000450303 GOLGA6L10A0A0M3HER8 536 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 POM121BA6NF01 834 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 ZNF185O15231 689 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 FANCGO15287 622 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 SPINT1O43278 529 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 PIGNO95427 931 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 SGCGQ13326 291 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 ZNF542PQ5EBM4 170 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 NCBP2-AS2Q69YL0 99 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 DHRS13Q6UX07 377 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 ARHGAP36Q6ZRI8 547 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 KANSL1Q7Z3B3 1105 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 PTAR1Q7Z6K3 402 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 TP53INP2Q8IXH6 220 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 PQLC3Q8N755 202 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 RAB7BQ96AH8 199 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 CAPZA3Q96KX2 299 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 OSBPL1AQ9BXW6 950 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 FRMD8P1Q9BZ68 369 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 PDFQ9HBH1 243 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 HOMER3Q9NSC5 361 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 MFHAS1Q9Y4C4 1052 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 IGF2RP11717 2491 aa17.19■□□□□ 0.34
PRPF40A-204ENST00000450303 ANKRD36A6QL64 1941 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 FAM149AA5PLN7 773 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 ARHGAP42A6NI28 874 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 APOC4-APOC2K7ER74 178 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 DFFAO00273 331 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 TSPAN6O43657 245 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 PRAMEF11O60813 436 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 MMP20O60882 483 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 DKK1O94907 266 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 APOC2P02655 101 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 TIMP2P16035 220 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 MX2P20592 715 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 CLDN6P56747 220 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 CCNI2Q6ZMN8 369 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 TMPRSS7Q7RTY8 843 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 ABI3BPQ7Z7G0 1075 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 ARHGAP12Q8IWW6 846 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 SLC22A18ASQ8N1D0 253 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 NPWQ8N729 165 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 PLD5Q8N7P1 536 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 KDF1Q8NAX2 398 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 ZCCHC14Q8WYQ9 949 aaKnown RBP17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 MS4A14Q96JA4 679 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 C1QTNF2Q9BXJ5 285 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 UCKL1Q9NWZ5 548 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 HEY1Q9Y5J3 304 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 HS3ST3A1Q9Y663 406 aa17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 GOLGA4Q13439 2230 aaKnown RBP17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 COL5A1P20908 1838 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-204ENST00000450303 A6NNZ2 444 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 ZNF189O75820 626 aaPredicted RBP17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 RGRP47804 291 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 KLF1Q13351 362 aaPredicted RBP17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 CREG2Q8IUH2 290 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 LRRC49Q8IUZ0 686 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 SLC25A45Q8N413 288 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 KLF6Q99612 283 aaPredicted RBP17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 FERMT1Q9BQL6 677 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 WRAP53Q9BUR4 548 aaKnown RBP17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 ETNK2Q9NVF9 386 aa17.17■□□□□ 0.34
PRPF40A-204ENST00000450303 LRRK1Q38SD2 2015 aa17.16■□□□□ 0.34
PRPF40A-204ENST00000450303 TRIM38O00635 465 aa17.16■□□□□ 0.34
PRPF40A-204ENST00000450303 FPGTO14772 594 aa17.16■□□□□ 0.34
PRPF40A-204ENST00000450303 PPP1R12AO14974 1030 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-204ENST00000450303 AREL1O15033 823 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms