RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CASC3O15234 703 aaKnown RBP20.86■□□□□ 0.93
SDC1-205ENST00000447124 HTRA2O43464 458 aaPredicted RBP20.86■□□□□ 0.93
SDC1-205ENST00000447124 RECQL5O94762 991 aaPredicted RBP20.86■□□□□ 0.93
SDC1-205ENST00000447124 HOXB3P14651 431 aaPredicted RBP20.86■□□□□ 0.93
SDC1-205ENST00000447124 AP1S1P61966 158 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 ALG11Q2TAA5 492 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 ENPP7Q6UWV6 458 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 DPPA4Q7L190 304 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 TBATAQ96M53 351 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 SLC13A1Q9BZW2 595 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 NOD2Q9HC29 1040 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 SCUBE2Q9NQ36 999 aa20.86■□□□□ 0.93
SDC1-205ENST00000447124 PCCBP05166 539 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 TGM2P21980 687 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 HK3P52790 923 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 CDH6P55285 790 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 MAXP61244 160 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 NFATC4Q14934 902 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 ASTE1Q2TB18 679 aaPredicted RBP20.85■□□□□ 0.93
SDC1-205ENST00000447124 EFL1Q7Z2Z2 1120 aaKnown RBP20.85■□□□□ 0.93
SDC1-205ENST00000447124 HID1Q8IV36 788 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 SLC35F3Q8IY50 421 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 PELI3Q8N2H9 469 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 NUDCD1Q96RS6 583 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 PACSIN1Q9BY11 444 aa20.85■□□□□ 0.93
SDC1-205ENST00000447124 ANKRD36A6QL64 1941 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 ANXA6P08133 673 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 POLR2LP62875 67 aaKnown RBP20.84■□□□□ 0.93
SDC1-205ENST00000447124 PTPRRQ15256 657 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 TCEA2Q15560 299 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 PERM1Q5SV97 790 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 RD3Q7Z3Z2 195 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 CBARPQ8N350 705 aaPredicted RBP20.84■□□□□ 0.93
SDC1-205ENST00000447124 ZNF564Q8TBZ8 553 aaPredicted RBP20.84■□□□□ 0.93
SDC1-205ENST00000447124 MAPK15Q8TD08 544 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 SPOCK2Q92563 424 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 MGME1Q9BQP7 344 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 ABCG4Q9H172 646 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 B4GALT6Q9UBX8 382 aa20.84■□□□□ 0.93
SDC1-205ENST00000447124 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.84■□□□□ 0.93
SDC1-205ENST00000447124 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.83■□□□□ 0.93
SDC1-205ENST00000447124 BRINP1O60477 761 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 SSR1P43307 286 aaKnown RBP20.83■□□□□ 0.93
SDC1-205ENST00000447124 TAS2R40P59535 323 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 SRP54P61011 504 aaKnown RBP20.83■□□□□ 0.93
SDC1-205ENST00000447124 TRAF2Q12933 501 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 MTM1Q13496 603 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 KRT81Q14533 505 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 ZNF235Q14590 738 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 NR0B2Q15466 257 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 C6orf132Q5T0Z8 1188 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 CRTC1Q6UUV9 634 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 PDZD3Q86UT5 571 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 PCDH19Q8TAB3 1148 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 CRELD1Q96HD1 420 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 DCBLD2Q96PD2 775 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 EVA1BQ9NVM1 165 aa20.83■□□□□ 0.93
SDC1-205ENST00000447124 TMEM202A6NGA9 273 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 CSO75390 466 aaKnown RBP20.82■□□□□ 0.92
SDC1-205ENST00000447124 PROSCO94903 275 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 RASGRP1O95267 797 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 ELFN1P0C7U0 828 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 ITPKBP27987 946 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 TRIM23P36406 574 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 HSPA9P38646 679 aaKnown RBP20.82■□□□□ 0.92
SDC1-205ENST00000447124 EIF2S3P41091 472 aaKnown RBP20.82■□□□□ 0.92
SDC1-205ENST00000447124 DPYSL3Q14195 570 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 IHHQ14623 411 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 MARC1Q5VT66 337 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 FSTL5Q8N475 847 aaPredicted RBP20.82■□□□□ 0.92
SDC1-205ENST00000447124 ATPAF2Q8N5M1 289 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 TEX26Q8N6G2 289 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 PAF1Q8N7H5 531 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 OR1E3Q8WZA6 343 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 COQ10AQ96MF6 247 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 LGR4Q9BXB1 951 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 NCKIPSDQ9NZQ3 722 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 CTTNBP2NLQ9P2B4 639 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 RCOR3Q9P2K3 495 aaPredicted RBP20.82■□□□□ 0.92
SDC1-205ENST00000447124 PADI4Q9UM07 663 aa20.82■□□□□ 0.92
SDC1-205ENST00000447124 HTR1BP28222 390 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 MMP13P45452 471 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 BLKP51451 505 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 PAFAH1B3Q15102 231 aaKnown RBP20.81■□□□□ 0.92
SDC1-205ENST00000447124 SLC18A3Q16572 532 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 HADHQ16836 314 aaKnown RBP20.81■□□□□ 0.92
SDC1-205ENST00000447124 NCBP2-AS2Q69YL0 99 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 OR8K1Q8NGG5 319 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 PDCD6IPQ8WUM4 868 aaKnown RBP20.81■□□□□ 0.92
SDC1-205ENST00000447124 LRRN4Q8WUT4 740 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 WDR92Q96MX6 357 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 DEPDC7Q96QD5 511 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 MRPL40Q9NQ50 206 aaKnown RBP20.81■□□□□ 0.92
SDC1-205ENST00000447124 KLQ9UEF7 1012 aa20.81■□□□□ 0.92
SDC1-205ENST00000447124 A0A1W2PNU3 283 aaPredicted RBP20.8■□□□□ 0.92
SDC1-205ENST00000447124 MFSD11O43934 449 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 SOCS5O75159 536 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 USP12O75317 370 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 MAP3K6O95382 1288 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 TNFP01375 233 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms