RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 A8MX80 341 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 ENC1O14682 589 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 PIAS2O75928 621 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 ZRANB2O95218 330 aaKnown RBP eCLIP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 PGLSO95336 258 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 TOP3BO95985 862 aaKnown RBP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 CYP2A6P11509 494 aaPredicted RBP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 CA4P22748 312 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 DGKAP23743 735 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 DYNLT1P63172 113 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 PPIDQ08752 370 aaKnown RBP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 AP1B1Q10567 949 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 AGERQ15109 404 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 WSCD2Q2TBF2 565 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 ZNF542PQ5EBM4 170 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 ALG1LQ6GMV1 187 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 LIPIQ6XZB0 460 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 SPOCD1Q6ZMY3 1216 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 BZW1Q7L1Q6 419 aaKnown RBP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 RAB44Q7Z6P3 723 aaPredicted RBP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 KIAA1328Q86T90 577 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 KATNAL2Q8IYT4 538 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 RCOR2Q8IZ40 523 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 TXLNBQ8N3L3 684 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 CHCHD4Q8N4Q1 142 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.26■□□□□ 0.03
LIMS3-201ENST00000437679 TPCN2Q8NHX9 752 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 SCNM1Q9BWG6 230 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 BRD8Q9H0E9 1235 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 B4GALT6Q9UBX8 382 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 WASF3Q9UPY6 502 aa15.26■□□□□ 0.03
LIMS3-201ENST00000437679 RCCD1A6NED2 376 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 NEMP2A6NFY4 417 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 BTNL10A8MVZ5 291 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 KCNK1O00180 336 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 RECQL5O94762 991 aaPredicted RBP15.25■□□□□ 0.03
LIMS3-201ENST00000437679 JCHAINP01591 159 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 CSF2P04141 144 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 PCCBP05166 539 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 HLA-DQB2P05538 268 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 ALPPL2P10696 532 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 NME1P15531 152 aaKnown RBP15.25■□□□□ 0.03
LIMS3-201ENST00000437679 JUNDP17535 347 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 SPINK2P20155 84 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 VIPR1P32241 457 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 CDKN2BP42772 138 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 PEX5P50542 639 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 VAV2P52735 878 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 DSC2Q02487 901 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 MTM1Q13496 603 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 ACOX1Q15067 660 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 TAZQ16635 292 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 CCDC157Q569K6 752 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 TPRG1LQ5T0D9 272 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 KAZNQ674X7 775 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 NPNTQ6UXI9 565 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 KDM7AQ6ZMT4 941 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 USP45Q70EL2 814 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 CCDC50Q8IVM0 306 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 SLC25A45Q8N413 288 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 ACRBPQ8NEB7 543 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 BTN2A2Q8WVV5 523 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 RBM41Q96IZ5 413 aaKnown RBP15.25■□□□□ 0.03
LIMS3-201ENST00000437679 UCKL1Q9NWZ5 548 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 TOR4AQ9NXH8 423 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 SALL4Q9UJQ4 1053 aa15.25■□□□□ 0.03
LIMS3-201ENST00000437679 REXO2Q9Y3B8 237 aaKnown RBP15.25■□□□□ 0.03
LIMS3-201ENST00000437679 CST8O60676 142 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 HTR1BP28222 390 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 NR2C2P49116 596 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 EPHB1P54762 984 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 IFI35P80217 286 aaPredicted RBP15.24■□□□□ 0.03
LIMS3-201ENST00000437679 EIF2B5Q13144 721 aaKnown RBP15.24■□□□□ 0.03
LIMS3-201ENST00000437679 ZNF211Q13398 564 aaPredicted RBP15.24■□□□□ 0.03
LIMS3-201ENST00000437679 ARHGEF7Q14155 803 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 INPP5AQ14642 412 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 TFDP3Q5H9I0 405 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 MACC1Q6ZN28 852 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 ATL2Q8NHH9 583 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 EXD1Q8NHP7 514 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 ARRDC2Q8TBH0 407 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 PIH1D2Q8WWB5 315 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 SCRN2Q96FV2 425 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 CNTNAP3BQ96NU0 1288 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 OLFM3Q96PB7 478 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 IL12RB2Q99665 862 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 APOOQ9BUR5 198 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 CNTNAP3Q9BZ76 1288 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 KCTD5Q9NXV2 234 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 SEPT10Q9P0V9 454 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 NEUROG3Q9Y4Z2 214 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 DUSP10Q9Y6W6 482 aa15.24■□□□□ 0.03
LIMS3-201ENST00000437679 TRIM38O00635 465 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 SCAMP1O15126 338 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 FFAR2O15552 330 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 PJA2O43164 708 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 SIGLEC6O43699 453 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 FZD6O60353 706 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 DKK1O94907 266 aa15.23■□□□□ 0.03
LIMS3-201ENST00000437679 HEXIM1O94992 359 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms