RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 SCML2Q9UQR0 700 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 PTGDR2Q9Y5Y4 395 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 COL4A6Q14031 1691 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 LCHNA4D1U4 455 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 HNRNPCL1O60812 293 aaKnown RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 LUC7L3O95232 432 aaKnown RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 IRF1P10914 325 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 MYOGP15173 224 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 ATP6V1C1P21283 382 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 OR1E1P30953 314 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 AIF1P55008 147 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 RAB10P61026 200 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 ASPHQ12797 758 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 GPR17Q13304 367 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 SLC12A1Q13621 1099 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 GPR158Q5T848 1215 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 RNF220Q5VTB9 566 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 FAM109BQ6ICB4 259 aaPredicted RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 LRRC8EQ6NSJ5 796 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 TMEM207Q6UWW9 146 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 GET4Q7L5D6 327 aaPredicted RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 TMEM199Q8N511 208 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 RTL3Q8N8U3 475 aaKnown RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 PPHLN1Q8NEY8 458 aaKnown RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 OR13C4Q8NGS5 318 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 OR6Y1Q8NGX8 325 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 TOP1MTQ969P6 601 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 ESAMQ96AP7 390 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 TMA16Q96EY4 203 aaKnown RBP9.53□□□□□ -0.88
CUX1-206ENST00000437600 FUBP3Q96I24 572 aaKnown RBP eCLIP9.53□□□□□ -0.88
CUX1-206ENST00000437600 TSNARE1Q96NA8 513 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 SERPINB11Q96P15 392 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 GPR78Q96P69 363 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 HAPLN3Q96S86 360 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 FBXO44Q9H4M3 255 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 POMKQ9H5K3 350 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 GKN1Q9NS71 199 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 SMPD4Q9NXE4 827 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 ADAMTS6Q9UKP5 1117 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 POMPQ9Y244 141 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 TCAF1Q9Y4C2 921 aa9.53□□□□□ -0.88
CUX1-206ENST00000437600 LTBP2Q14767 1821 aa9.52□□□□□ -0.88
CUX1-206ENST00000437600 ERI2A8K979 691 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 MATN2O00339 956 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 AHCYL1O43865 530 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 MAGEC1O60732 1142 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 ANXA9O76027 345 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 KLHL2O95198 593 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 SEC24AO95486 1093 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 PEX11BO96011 259 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 MPOP05164 745 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 ADRA1AP35348 466 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 MAGEA12P43365 314 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 RAP1GDS1P52306 607 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 BTG3Q14201 252 aaPredicted RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 SEL1L3Q68CR1 1132 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 TRIM67Q6ZTA4 783 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 LINC00523Q86TU6 105 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 LRRC43Q8N309 656 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 PCDH20Q8N6Y1 951 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 C8orf48Q96LL4 319 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 YME1L1Q96TA2 773 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 SEMA3CQ99985 751 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 MCMBPQ9BTE3 642 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 SEZ6LQ9BYH1 1024 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 ALG9Q9H6U8 611 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 ELAC1Q9H777 363 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 SP110Q9HB58 689 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 GPAMQ9HCL2 828 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 FBRSL1Q9HCM7 1045 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 PAPOLBQ9NRJ5 636 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.52□□□□□ -0.89
CUX1-206ENST00000437600 GPR39O43194 453 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 SIX3O95343 332 aaPredicted RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 FESP07332 822 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 CCNG1P51959 295 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 RPS24P62847 133 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 STXBP5Q5T5C0 1151 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 LIPMQ5VYY2 423 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 ARHGAP24Q8N264 748 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 RAB3IL1Q8TBN0 382 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 PDCD6IPQ8WUM4 868 aaKnown RBP9.52□□□□□ -0.89
CUX1-206ENST00000437600 RCN3Q96D15 328 aa9.52□□□□□ -0.89
CUX1-206ENST00000437600 MUC3AQ02505 3323 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 A6NHS1 94 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 OR6C75A6NL08 312 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 NAT1P18440 290 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 CDKN1CP49918 316 aaPredicted RBP9.51□□□□□ -0.89
CUX1-206ENST00000437600 CDKN2DP55273 166 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 COG7P83436 770 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 CCNIQ14094 377 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 POLD3Q15054 466 aaPredicted RBP9.51□□□□□ -0.89
CUX1-206ENST00000437600 TSNAXIP1Q2TAA8 658 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 TBC1D25Q3MII6 688 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 BRMS1LQ5PSV4 323 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 C6orf163Q5TEZ5 329 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 MANEALQ5VSG8 457 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 SDCCAG8Q86SQ7 713 aaPredicted RBP9.51□□□□□ -0.89
CUX1-206ENST00000437600 DCBLD1Q8N8Z6 715 aa9.51□□□□□ -0.89
CUX1-206ENST00000437600 OR7D4Q8NG98 312 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms