RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 FAM72BQ86X60 149 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 IL22RA1Q8N6P7 574 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 PLA2G15Q8NCC3 412 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 FUBP1Q96AE4 644 aaKnown RBP16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 TMEM168Q9H0V1 697 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 FGF22Q9HCT0 170 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 SIX2Q9NPC8 291 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 PCDH12Q9NPG4 1184 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 DNAJC12Q9UKB3 198 aa16.84■□□□□ 0.29
CHCHD3-202ENST00000423635 IGHV5-10-1A0A0J9YXX1 117 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 GOLGA6L4A6NEF3 574 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 CACNB4O00305 520 aaPredicted RBP16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 CAPN5O15484 640 aaPredicted RBP16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 INSIG1O15503 277 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 LRIG2O94898 1065 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 PCCBP05166 539 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 KELP23276 732 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 TRIM23P36406 574 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 OR1D5P58170 312 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 RHOAP61586 193 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 TRA2AQ13595 282 aaKnown RBP eCLIP16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 GRM3Q14832 879 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 RCBTB1Q8NDN9 531 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 CCL4L1Q8NHW4 92 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 DDA1Q9BW61 102 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 MAGEB5Q9BZ81 275 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 SUV39H2Q9H5I1 410 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 MRPL40Q9NQ50 206 aaKnown RBP16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 DAAM1Q9Y4D1 1078 aa16.83■□□□□ 0.28
CHCHD3-202ENST00000423635 ARHGEF17Q96PE2 2063 aaPredicted RBP16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 ZNF891A8MT65 544 aaPredicted RBP16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 B4DGG1 531 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 ZW10O43264 779 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 CD1CP29017 333 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 LIMK2P53671 638 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 ATP11AP98196 1134 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 SQSTM1Q13501 440 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 AMZ1Q400G9 498 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 RAB6CQ53S08 254 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 ERAP2Q6P179 960 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 CACNA2D3Q8IZS8 1091 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 KIAA1524Q8TCG1 905 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 PMEPA1Q969W9 287 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 TBC1D31Q96DN5 1066 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 SLC45A3Q96JT2 553 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 ZNF641Q96N77 438 aaPredicted RBP16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 NUDT22Q9BRQ3 303 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 RAB6CQ9H0N0 254 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 PDCL3Q9H2J4 239 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 NOL6Q9H6R4 1146 aaKnown RBP16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 B3GALT1Q9Y5Z6 326 aa16.82■□□□□ 0.28
CHCHD3-202ENST00000423635 NOTCH2Q04721 2471 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 SPTAN1Q13813 2472 aaKnown RBP16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 GOLGA8SH3BPF8 625 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 PIGNO95427 931 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 FGF1P05230 155 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 PLEKP08567 350 aaPredicted RBP16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 PNMA6AP0CW24 399 aaPredicted RBP16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 CYP11B1P15538 503 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 ALDH4A1P30038 563 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 MMP12P39900 470 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 STAT1P42224 750 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 GPR3P46089 330 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 CD97P48960 835 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 CYTH1Q15438 398 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 C2CD6Q53TS8 623 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 BRAT1Q6PJG6 821 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 DNAAF5Q86Y56 855 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 NETO2Q8NC67 525 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 C9orf43Q8TAL5 461 aaPredicted RBP16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 CCDC74BQ96LY2 380 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 KLC2Q9H0B6 622 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 ZNF71Q9NQZ8 489 aaPredicted RBP16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 SPATS2LQ9NUQ6 558 aaKnown RBP16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 LHX3Q9UBR4 397 aa16.81■□□□□ 0.28
CHCHD3-202ENST00000423635 USP9XQ93008 2570 aaPredicted RBP16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 BLACEA4D250 179 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 RHPN2P1A8MT19 583 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 RECQL5O94762 991 aaPredicted RBP16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 YBEYP58557 167 aaPredicted RBP16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 TSR1Q2NL82 804 aaKnown RBP16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 CCDC14Q49A88 953 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 NRROSQ86YC3 692 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 EMC1Q8N766 993 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 AGBL5Q8NDL9 886 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 CCDC112Q8NEF3 446 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 OR4D9Q8NGE8 314 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 MIB2Q96AX9 1013 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 NCAPGQ9BPX3 1015 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 LGR4Q9BXB1 951 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 ASPSCR1Q9BZE9 553 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 SPRY4Q9C004 299 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 CYP4F12Q9HCS2 524 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 ATP8A1Q9Y2Q0 1164 aa16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 UTP20O75691 2785 aaKnown RBP16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 SPENQ96T58 3664 aaKnown RBP16.8■□□□□ 0.28
CHCHD3-202ENST00000423635 B4E171 279 aa16.79■□□□□ 0.28
CHCHD3-202ENST00000423635 NKX2-8O15522 239 aa16.79■□□□□ 0.28
CHCHD3-202ENST00000423635 BUB1BO60566 1050 aaPredicted RBP16.79■□□□□ 0.28
CHCHD3-202ENST00000423635 RAD1O60671 282 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms