RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 THOC5Q13769 683 aaKnown RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 ELAVL3Q14576 367 aaKnown RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TAF1AQ15573 450 aaPredicted RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 KBTBD12Q3ZCT8 623 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 ARSIQ5FYB1 569 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TSTD2Q5T7W7 516 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 PDPK2PQ6A1A2 396 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 BRAT1Q6PJG6 821 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TAOK1Q7L7X3 1001 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TMEM135Q86UB9 458 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 KCNMB4Q86W47 210 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 STK40Q8N2I9 435 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 OTUD6BQ8N6M0 293 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 PPM1NQ8N819 430 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 ATXN2LQ8WWM7 1075 aaKnown RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 MFSD3Q96ES6 412 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 PPP1R16AQ96I34 528 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TMEM109Q9BVC6 243 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 GPR63Q9BZJ6 419 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TRABDQ9H4I3 376 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 MTG2Q9H4K7 406 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 DYRK4Q9NR20 520 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 CACNA2D2Q9NY47 1150 aa17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 PSMC3IPQ9P2W1 217 aaPredicted RBP17.21■□□□□ 0.34
CCDC28B-202ENST00000421922 TCF20Q9UGU0 1960 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 LOC730098B7Z3J9 87 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 C1QTNF3-AMACRE9PGA6 284 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 KPNA3O00505 521 aaPredicted RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 NARSO43776 548 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 SYNCRIPO60506 623 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 RNASEH1O60930 286 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 SIN3BO75182 1162 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 CDH16O75309 829 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 TCEA3O75764 348 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PAPSS2O95340 614 aaPredicted RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PRKCGP05129 697 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 HNRNPLP14866 589 aaKnown RBP eCLIP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PRKCHP24723 683 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC8A1P32418 973 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 TIE1P35590 1138 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PLA2G5P39877 138 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 FRG1Q14331 258 aaKnown RBP17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 STARD3Q14849 445 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 SKIDA1Q1XH10 827 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 ZNF449Q6P9G9 518 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 LRRC6Q86X45 466 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 STYXQ8WUJ0 223 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PIH1D2Q8WWB5 315 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PEX13Q92968 403 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 ASB2Q96Q27 587 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PAFAH2Q99487 392 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 TMEM245Q9H330 911 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 MAGEE1Q9HCI5 957 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC2A4RGQ9NR83 387 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 VPS18Q9P253 973 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 THEGQ9P2T0 379 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 FETUBQ9UGM5 382 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 PKP3Q9Y446 797 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 ZNF711Q9Y462 761 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 ARL5AQ9Y689 179 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 STON1Q9Y6Q2 735 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 WASF2Q9Y6W5 498 aa17.2■□□□□ 0.34
CCDC28B-202ENST00000421922 A0A0J9YYE9 177 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 BDP1A6H8Y1 2624 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 CAPN8A6NHC0 703 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 AGPSO00116 658 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 ALDH1A2O94788 518 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 TRBC1P01850 177 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 CYP2A6P11509 494 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 LPOP22079 712 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 EFTUD2Q15029 972 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 TMED2Q15363 201 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 ZNF805Q5CZA5 627 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 KIAA0930Q6ICG6 404 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 TRMT10BQ6PF06 316 aaKnown RBP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 TXNDC11Q6PKC3 985 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 TPRG1Q6ZUI0 275 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 CYS1Q717R9 158 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 ADHFE1Q8IWW8 467 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 FCRL3Q96P31 734 aaPredicted RBP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 FBRSL1Q9HCM7 1045 aaKnown RBP17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 ZDHHC4Q9NPG8 344 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 NSMCE4AQ9NXX6 385 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 SPO11Q9Y5K1 396 aa17.19■□□□□ 0.34
CCDC28B-202ENST00000421922 C1orf232A0A0U1RR37 186 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 FAM159BA6NKW6 160 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 MAN2B1O00754 1011 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 STX7O15400 261 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 VAPBO95292 243 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 EGFP01133 1207 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 IL1BP01584 269 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 ALPIP09923 528 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 ERVK-10P10266 1014 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 WASP42768 502 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 SMAD1Q15797 465 aaKnown RBP17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 CNGA3Q16281 694 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 SLC44A4Q53GD3 710 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 TMEM196Q5HYL7 178 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 C9orf64Q5T6V5 341 aa17.18■□□□□ 0.34
CCDC28B-202ENST00000421922 LGSNQ5TDP6 509 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms