RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF334Q9HCZ1 680 aaPredicted RBP8.43□□□□□ -1.06
USP54-203ENST00000418501 NDE1Q9NXR1 346 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 GDE1Q9NZC3 331 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 CCDC195A0A1B0GUA6 201 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 H3BNC9 293 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 ATP5F1P24539 256 aaPredicted RBP8.43□□□□□ -1.06
USP54-203ENST00000418501 MXRA7P84157 204 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 SDE2Q6IQ49 451 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 BRAT1Q6PJG6 821 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 FRA10AC1Q70Z53 315 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 PLPP6Q8IY26 295 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 PBXIP1Q96AQ6 731 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 ATXN7L3BQ96GX2 97 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 SERAC1Q96JX3 654 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 ZNF317Q96PQ6 595 aaPredicted RBP8.43□□□□□ -1.06
USP54-203ENST00000418501 IL21Q9HBE4 155 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 SPHK2Q9NRA0 654 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 PIH1D1Q9NWS0 290 aaKnown RBP8.43□□□□□ -1.06
USP54-203ENST00000418501 SUN2Q9UH99 717 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 VPS51Q9UID3 782 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 GNPTGQ9UJJ9 305 aa8.43□□□□□ -1.06
USP54-203ENST00000418501 A0A0G2JND7 137 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ZCWPW2A0A1B0GU75 182 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 NEDD8-MDP1E9PL57 170 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 PLIN3O60664 434 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 RNASEH1O60930 286 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 CSPG5O95196 566 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 SLC4A1P02730 911 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 C2P06681 752 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 PTGER3P43115 390 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 LEPRP48357 1165 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 CCR3P51677 355 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ECT2LQ008S8 904 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 EIF4HQ15056 248 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 GEN1Q17RS7 908 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 PITRM1Q5JRX3 1037 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ESRP1Q6NXG1 681 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 NCEH1Q6PIU2 408 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 PIWIL4Q7Z3Z4 852 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 ZC3HC1Q86WB0 502 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 HS6ST3Q8IZP7 471 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ZSCAN18Q8TBC5 510 aaPredicted RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 TDRD1Q9BXT4 1180 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 RNF38Q9H0F5 515 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 SAR1AQ9NR31 198 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 CHKBQ9Y259 395 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ANKRD66B4E2M5 251 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 CIB2O75838 187 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ZNF30P17039 623 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 MAPRE2Q15555 327 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ZNF284Q2VY69 593 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 RBFAQ8N0V3 343 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 MICALL1Q8N3F8 863 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ARRDC2Q8TBH0 407 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 HEPHQ9BQS7 1158 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 NOL6Q9H6R4 1146 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 ZFYVE1Q9HBF4 777 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 NOD2Q9HC29 1040 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 DEC1Q9P2X7 70 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 TSC2P49815 1807 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 CXorf49A8MYA2 514 aaPredicted RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 NPC1O15118 1278 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 PRNPP04156 253 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 SYN1P17600 705 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 BGNP21810 368 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 HOXD9P28356 352 aaPredicted RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 IRX4P78413 519 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 IRX1P78414 480 aaPredicted RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 ACAP2Q15057 778 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 FAM46CQ5VWP2 391 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 TXNDC11Q6PKC3 985 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 BPIFB1Q8TDL5 484 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ISL2Q96A47 359 aa8.42□□□□□ -1.06
USP54-203ENST00000418501 ZCCHC2Q9C0B9 1178 aaKnown RBP8.42□□□□□ -1.06
USP54-203ENST00000418501 A0A0D9SEW6 157 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 C1QTNF3-AMACRE9PGA6 284 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 I6L893 689 aaPredicted RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 BNIP3LO60238 219 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 GPC4O75487 556 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 RFPL1O75677 317 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ESR1P03372 595 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 GCAP28676 217 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 SLC1A6P48664 564 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 DGKGP49619 791 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 ERVFC1P60507 584 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 GALNT3Q14435 633 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 LIPMQ5VYY2 423 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 BBS7Q8IWZ6 715 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 TP53INP2Q8IXH6 220 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 AGGF1Q8N302 714 aaeCLIP8.41□□□□□ -1.06
USP54-203ENST00000418501 SHKBP1Q8TBC3 707 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 STAG3L4Q8TBR4 150 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 HCAR2Q8TDS4 363 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 MCUR1Q96AQ8 359 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 CYP2S1Q96SQ9 504 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 PDFQ9HBH1 243 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 NPHS2Q9NP85 383 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 TREX1Q9NSU2 369 aa8.41□□□□□ -1.06
USP54-203ENST00000418501 HECAQ9UBI9 543 aaPredicted RBP8.41□□□□□ -1.06
USP54-203ENST00000418501 NEU3Q9UQ49 428 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms