RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 C6P13671 934 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 ENGP17813 658 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 HNRNPA2B1P22626 353 aaKnown RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 MSNP26038 577 aaKnown RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 AKT2P31751 481 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 VIPR1P32241 457 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 NUDT1P36639 197 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 GRIA4P48058 902 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 CSNK1EP49674 416 aaKnown RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 LIG3P49916 1009 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 POLR2LP62875 67 aaKnown RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 RACK1P63244 317 aaKnown RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 BNC1Q01954 994 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 LMNB2Q03252 620 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 GALNT3Q14435 633 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 SIX1Q15475 284 aaPredicted RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 TEAD4Q15561 434 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 GCNT7Q6ZNI0 430 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 PID1Q7Z2X4 250 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 ZSCAN30Q86W11 494 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 C17orf53Q8N3J3 647 aaPredicted RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 TMEM145Q8NBT3 493 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 OR2I1PQ8NGU4 316 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 PIH1D2Q8WWB5 315 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 TADA1Q96BN2 335 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 FERMT1Q9BQL6 677 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 C1QTNF2Q9BXJ5 285 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 TMEM121BQ9BXQ6 578 aaPredicted RBP12.54□□□□□ -0.4
SKA1-203ENST00000417656 SLC17A9Q9BYT1 436 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 GBA3Q9H227 469 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 PCDH9Q9HC56 1237 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 UBP1Q9NZI7 540 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 DNPEPQ9ULA0 475 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 PHTF1Q9UMS5 762 aa12.54□□□□□ -0.4
SKA1-203ENST00000417656 CACNA1EQ15878 2313 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 A0A1W2PR77 199 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 CAPN8A6NHC0 703 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 PRAMEF26H0Y7S4 382 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 H0Y8X5 98 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 LIASO43766 372 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 PMPCBO75439 489 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 TM7SF2O76062 418 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 STK10O94804 968 aaKnown RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 PAK4O96013 591 aaPredicted RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 PRLP01236 227 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 ELFN1P0C7U0 828 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 CYP2A6P11509 494 aaPredicted RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 LHCGRP22888 699 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 CD38P28907 300 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 EPHB1P54762 984 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 GDF10P55107 478 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 CLDN2P57739 230 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 SGCGQ13326 291 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 SNX1Q13596 522 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 SLC14A2Q15849 920 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 CNGA3Q16281 694 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 KDM7AQ6ZMT4 941 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 USP45Q70EL2 814 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 TSPAN33Q86UF1 283 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 PDCD7Q8N8D1 485 aaKnown RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 FAM71DQ8N9W8 422 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 CCDC110Q8TBZ0 833 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 C1orf54Q8WWF1 131 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 OXNAD1Q96HP4 312 aaPredicted RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 SPATA13Q96N96 652 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 FCRL5Q96RD9 977 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 MCCC1Q96RQ3 725 aaPredicted RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 TRIB3Q96RU7 358 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 GORASP1Q9BQQ3 440 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 TMEM121Q9BTD3 319 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 GTPBP2Q9BX10 602 aaKnown RBP12.53□□□□□ -0.4
SKA1-203ENST00000417656 USP29Q9HBJ7 922 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 TRHDEQ9UKU6 1024 aa12.53□□□□□ -0.4
SKA1-203ENST00000417656 A0A0J9YYE9 177 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 A0A0U1RQS6 177 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.52□□□□□ -0.41
SKA1-203ENST00000417656 ARHGAP33O14559 1287 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 SNPHO15079 494 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 VILLO15195 856 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 LZTS3O60299 673 aaPredicted RBP12.52□□□□□ -0.41
SKA1-203ENST00000417656 FOXD2O60548 495 aaPredicted RBP12.52□□□□□ -0.41
SKA1-203ENST00000417656 HEXIM1O94992 359 aaKnown RBP12.52□□□□□ -0.41
SKA1-203ENST00000417656 TRBC1P01850 177 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 GM2AP17900 193 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 PSMB4P28070 264 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 IGFALSP35858 605 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 C21orf59P57076 290 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 RPL26P61254 145 aaKnown RBP12.52□□□□□ -0.41
SKA1-203ENST00000417656 GNG11P61952 73 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 IRF4Q15306 451 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 OASLQ15646 514 aaKnown RBP12.52□□□□□ -0.41
SKA1-203ENST00000417656 QPCTQ16769 361 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 LONRF2Q1L5Z9 754 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 KIF19Q2TAC6 998 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 ANKRD20A2Q5SQ80 823 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 ANKRD20A1Q5TYW2 823 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 ANKRD20A3Q5VUR7 823 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 DENND2CQ68D51 928 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 ITPRIPL1Q6GPH6 555 aa12.52□□□□□ -0.41
SKA1-203ENST00000417656 KDELC1Q6UW63 502 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms