RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SCNN1AP37088 669 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 HDAC4P56524 1084 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 CLEC16AQ2KHT3 1053 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 RAB11FIP2Q7L804 512 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 TTC7BQ86TV6 843 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 ZFAND4Q86XD8 727 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 TMEM139Q8IV31 216 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 PELI3Q8N2H9 469 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 FBXO39Q8N4B4 442 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 ARL10Q8N8L6 244 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 PLA2G15Q8NCC3 412 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 ASB12Q8WXK4 309 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 NAT6Q93015 286 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 RAB7BQ96AH8 199 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 ISG20Q96AZ6 181 aaKnown RBP13.02□□□□□ -0.33
LINC00339-202ENST00000416769 C11orf70Q9BRQ4 267 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 DEF6Q9H4E7 631 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 TMEM248Q9NWD8 314 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 FOXJ2Q9P0K8 574 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 LHX3Q9UBR4 397 aa13.02□□□□□ -0.33
LINC00339-202ENST00000416769 SDK2Q58EX2 2172 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 PRAMEF33A0A0G2JMD5 474 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 BUB1O43683 1085 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 NRDCO43847 1150 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 AKR1B10O60218 316 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 PRAMEF10O60809 474 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 POP4O95707 220 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 PCCBP05166 539 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 RHOQP17081 205 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 CYLC1P35663 651 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 RPIAP49247 311 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 HK3P52790 923 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 SNX16P57768 344 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 SNRPD1P62314 119 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 KCNC4Q03721 635 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 PTK2BQ14289 1009 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 POLD3Q15054 466 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 SLC18A3Q16572 532 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 ACAD10Q6JQN1 1059 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 ENPP7Q6UWV6 458 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 PLPP6Q8IY26 295 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 CCL4L1Q8NHW4 92 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 TPCN2Q8NHX9 752 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 CXorf40AQ8TE69 158 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 BTN2A2Q8WVV5 523 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 HTR3CQ8WXA8 447 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 OR1E3Q8WZA6 343 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 PMEPA1Q969W9 287 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 HMCESQ96FZ2 354 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 LIN37Q96GY3 246 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 GFM1Q96RP9 751 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 MRPL40Q9NQ50 206 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 SEPT11Q9NVA2 429 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 NCKIPSDQ9NZQ3 722 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 GPR34Q9UPC5 381 aa13.01□□□□□ -0.33
LINC00339-202ENST00000416769 EPN1Q9Y6I3 576 aaPredicted RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 ZFC3H1O60293 1989 aaKnown RBP13.01□□□□□ -0.33
LINC00339-202ENST00000416769 A0A087X0T9 212 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 CAPN8A6NHC0 703 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 C2CD4BA6NLJ0 364 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 KDELR3O43731 214 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 RAMP2O60895 175 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 LCA5LO95447 670 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 FAM228BP0C875 321 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 ITGB6P18564 788 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 RGRP47804 291 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 MAPKAPK2P49137 400 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 INHBCP55103 352 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 RHOAP61586 193 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 INPP5AQ14642 412 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 CYTH1Q15438 398 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 CCDC122Q5T0U0 273 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 ESRP1Q6NXG1 681 aaKnown RBP13□□□□□ -0.33
LINC00339-202ENST00000416769 ALKBH5Q6P6C2 394 aaKnown RBP13□□□□□ -0.33
LINC00339-202ENST00000416769 ZNF354CQ86Y25 554 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 PHF13Q86YI8 300 aaPredicted RBP13□□□□□ -0.33
LINC00339-202ENST00000416769 PIP4P2Q8N4L2 257 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 JPH3Q8WXH2 748 aaPredicted RBP13□□□□□ -0.33
LINC00339-202ENST00000416769 TBC1D31Q96DN5 1066 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 NSMCE3Q96MG7 304 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 GDAP1L1Q96MZ0 367 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 ISCUQ9H1K1 167 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 LRRN3Q9H3W5 708 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 FGF22Q9HCT0 170 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 PCDH12Q9NPG4 1184 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 DOLKQ9UPQ8 538 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 LOXL2Q9Y4K0 774 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 PAXBP1Q9Y5B6 917 aa13□□□□□ -0.33
LINC00339-202ENST00000416769 TMEM202A6NGA9 273 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 SOWAHDA6NJG2 315 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 EIF3CLB5ME19 914 aaKnown RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 BUB1BO60566 1050 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 FTLP02792 175 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 NSFP46459 744 aaKnown RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 SRP54P61011 504 aaKnown RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 YPEL5P62699 121 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 NRG1Q02297 640 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 PTP4A2Q12974 167 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 NFATC4Q14934 902 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms