RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	TRBC1	P01850	177 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	CTPS1	P17812	591 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	HLA-DPA1	P20036	260 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	VIPR1	P32241	457 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	MMP12	P39900	470 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	VPS41	P49754	854 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	CCR5	P51681	352 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	RPS21	P63220	83 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	BASP1	P80723	227 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	DHX34	Q14147	1143 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	GALNT3	Q14435	633 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	PLK5	Q496M5	336 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	TMEM52B	Q4KMG9	183 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	SYCP2L	Q5T4T6	812 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	NAPEPLD	Q6IQ20	393 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	SYDE1	Q6ZW31	735 aa	Predicted RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	DPPA4	Q7L190	304 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	ZNF572	Q7Z3I7	529 aa	Predicted RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	PRUNE1	Q86TP1	453 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	TRIM69	Q86WT6	500 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	KLHDC8B	Q8IXV7	354 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	TMEFF1	Q8IYR6	380 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	TAB3	Q8N5C8	712 aa	Predicted RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	MNS1	Q8NEH6	495 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	SCRN2	Q96FV2	425 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	ZC3H10	Q96K80	434 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	HSPA12B	Q96MM6	686 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	MCCC1	Q96RQ3	725 aa	Predicted RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	TRIB3	Q96RU7	358 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	SRPK1	Q96SB4	655 aa	Known RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	TBL1Y	Q9BQ87	522 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	GORASP1	Q9BQQ3	440 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	FICD	Q9BVA6	458 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	EPC1	Q9H2F5	836 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	C6orf106	Q9H6K1	298 aa	Predicted RBP	13.22	□□□□□ -0.29
SF1-206	ENST00000413725	LRRC40	Q9H9A6	602 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	ETNK1	Q9HBU6	452 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	B4GALT6	Q9UBX8	382 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	ITM2B	Q9Y287	266 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	PPIL1	Q9Y3C6	166 aa		13.22	□□□□□ -0.29
SF1-206	ENST00000413725	ADAMTS9	Q9P2N4	1935 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.21	□□□□□ -0.29
SF1-206	ENST00000413725	LOC285095	A0A1B0GVY8	99 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725		A0A1W2PQU0	124 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	METTL12	A8MUP2	240 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SPINT1	O43278	529 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	AP2A1	O95782	977 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	PRKCG	P05129	697 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	FGF1	P05230	155 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	NUDT1	P36639	197 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	DHPS	P49366	369 aa	Predicted RBP	13.21	□□□□□ -0.29
SF1-206	ENST00000413725	DR1	Q01658	176 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	C2orf54	Q08AI8	447 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	GPS1	Q13098	491 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SEMA5A	Q13591	1074 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	ARHGEF7	Q14155	803 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	TRIP13	Q15645	432 aa	Predicted RBP	13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SLC1A5	Q15758	541 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	QPCT	Q16769	361 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SETMAR	Q53H47	684 aa	Predicted RBP	13.21	□□□□□ -0.29
SF1-206	ENST00000413725	KCTD11	Q693B1	232 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	LINC00523	Q86TU6	105 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	HORMAD1	Q86X24	394 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SLC25A41	Q8N5S1	370 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	DEFB119	Q8N690	84 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	PDCD7	Q8N8D1	485 aa	Known RBP	13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SNX19	Q92543	992 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	KRT12	Q99456	494 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	WRAP53	Q9BUR4	548 aa	Known RBP	13.21	□□□□□ -0.29
SF1-206	ENST00000413725	SEMA4A	Q9H3S1	761 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	GGT7	Q9UJ14	662 aa		13.21	□□□□□ -0.29
SF1-206	ENST00000413725	NPIPB15	A6NHN6	443 aa	Predicted RBP	13.2	□□□□□ -0.3
SF1-206	ENST00000413725	TM7SF2	O76062	418 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	AGT	P01019	485 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	APRT	P07741	180 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ALPI	P09923	528 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ELFN1	P0C7U0	828 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ZNF30	P17039	623 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ITIH2	P19823	946 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ADRA1A	P35348	466 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	DPP6	P42658	865 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	PPP2CB	P62714	309 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	PPP2CA	P67775	309 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	RALGDS	Q12967	914 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	PTK6	Q13882	451 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	SIRPB2	Q5JXA9	342 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	WDR45B	Q5MNZ6	344 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	LYSMD4	Q5XG99	296 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	RANBP10	Q6VN20	620 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	MAATS1	Q7Z4T9	603 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	SLC41A1	Q8IVJ1	513 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	BIRC7	Q96CA5	298 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	LYSMD1	Q96S90	227 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	C1QTNF7	Q9BXJ2	289 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	EIF2B3	Q9NR50	452 aa	Known RBP	13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ASIC3	Q9UHC3	531 aa		13.2	□□□□□ -0.3
SF1-206	ENST00000413725	SMG5	Q9UPR3	1016 aa	Known RBP	13.2	□□□□□ -0.3
SF1-206	ENST00000413725	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.2	□□□□□ -0.3
SF1-206	ENST00000413725	NEU2	Q9Y3R4	380 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms