RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZRANB3Q5FWF4 1079 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 STYXQ8WUJ0 223 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 NMD3Q96D46 503 aaKnown RBP13.45□□□□□ -0.26
VPS54-203ENST00000409558 CSNK1G1Q9HCP0 422 aa13.45□□□□□ -0.26
VPS54-203ENST00000409558 CCDC162PA2VCL2 907 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 UGT1A6P19224 532 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 GKP32189 559 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 RGRP47804 291 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 FOXD4Q12950 439 aaPredicted RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 AGAP9Q5VTM2 703 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 TMEM207Q6UWW9 146 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 MON1AQ86VX9 555 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 SUSD3Q96L08 255 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 KLHL4Q9C0H6 718 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 MUC3BQ9H195 1237 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 KATNA1O75449 491 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 RPL10P27635 214 aaKnown RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 MAPRE1Q15691 268 aaKnown RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 RTP2Q5QGT7 225 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 RANBP10Q6VN20 620 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 ST13P5Q8NFI4 369 aaPredicted RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 OR4K2Q8NGD2 314 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 RAET1EQ8TD07 263 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 MRPL1Q9BYD6 325 aaKnown RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 SMOC2Q9H3U7 446 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 FAM124BQ9H5Z6 455 aaPredicted RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 STARD7Q9NQZ5 370 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 DONSONQ9NYP3 566 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 CCDC189A1A4V9 331 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 HEATR9A2RTY3 570 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 GGT5P36269 586 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 ALDH1A3P47895 512 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 VPS26BQ4G0F5 336 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 SGO1Q5FBB7 561 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 CLEC14AQ86T13 490 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 DCP1BQ8IZD4 617 aaKnown RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 RAB3IL1Q8TBN0 382 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 ACOX2Q99424 681 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 PRDM5Q9NQX1 630 aaPredicted RBP13.44□□□□□ -0.26
VPS54-203ENST00000409558 LOC285556D6RIA3 1793 aa13.44□□□□□ -0.26
VPS54-203ENST00000409558 A0A1B0GTL3 188 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 E7ENX8 843 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 OR1I1O60431 355 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 BAIAP3O94812 1187 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 GLP2RO95838 553 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 GUCA1CO95843 209 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 CREB5Q02930 508 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 BNIPLQ7Z465 357 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 TMEM151AQ8N4L1 468 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 C3orf30Q96M34 536 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 RRN3Q9NYV6 651 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 CLIC5Q9NZA1 410 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 TNFRSF10BO14763 440 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 LTA4HP09960 611 aaKnown RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 SLC2A3P11169 496 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 OR1D2P34982 312 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 HCAR3P49019 387 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 AGTR2P50052 363 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 SULT2A1Q06520 285 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 SEMA3AQ14563 771 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 LRRC73Q5JTD7 316 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 KDM1BQ8NB78 822 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 OR13J1Q8NGT2 312 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 EME1Q96AY2 570 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 IL12RB2Q99665 862 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 EFCAB1Q9HAE3 211 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 TLR9Q9NR96 1032 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 CORO1CQ9ULV4 474 aaPredicted RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 ZNF839A8K0R7 811 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 SNAP91O60641 907 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 ACLYP53396 1101 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 NAB1Q13506 487 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 TIGD7Q6NT04 549 aaPredicted RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 IRGCQ6NXR0 463 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 POTEHQ6S545 545 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 ACTRT2Q8TDY3 377 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 PTERQ96BW5 349 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 GALPQ9UBC7 116 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 AFF4Q9UHB7 1163 aaKnown RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 MID2Q9UJV3 735 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 ZFP37Q9Y6Q3 630 aaPredicted RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 SRP72O76094 671 aaKnown RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 IPO13O94829 963 aaKnown RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 ATP5F1P24539 256 aaPredicted RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 LBRQ14739 615 aaKnown RBP13.43□□□□□ -0.26
VPS54-203ENST00000409558 TBCCQ15814 346 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 CYS1Q717R9 158 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 CEP70Q8NHQ1 597 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 CD99L2Q8TCZ2 262 aa13.43□□□□□ -0.26
VPS54-203ENST00000409558 XIRP2A4UGR9 3374 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 SAC3D1A6NKF1 404 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 H3BMM5 538 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 PSMD12O00232 456 aaPredicted RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 SDHDO14521 159 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 FGF10O15520 208 aaPredicted RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 FKBP1BP68106 108 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 FOLH1Q04609 750 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 BRMS1LQ5PSV4 323 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 ATP6V0D2Q8N8Y2 350 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 DNAJB14Q8TBM8 379 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms