RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 ETNK2Q9NVF9 386 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 ZNHIT6Q9NWK9 470 aaKnown RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 UVRAGQ9P2Y5 699 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 SPASTQ9UBP0 616 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 APOBEC3BQ9UH17 382 aaKnown RBP13.5□□□□□ -0.25
VCX3A-202ENST00000398729 KLF15Q9UIH9 416 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 NENFQ9UMX5 172 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 COQ6Q9Y2Z9 468 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 LRRK1Q38SD2 2015 aa13.5□□□□□ -0.25
VCX3A-202ENST00000398729 CFAP69A5D8W1 941 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 TMEM110-MUSTN1A8MSY1 372 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 PRKCGP05129 697 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 PEX5P50542 639 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 RTP5Q14D33 572 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 AGERQ15109 404 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 WSCD2Q2TBF2 565 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 FAXCQ5TGI0 409 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 ZCCHC8Q6NZY4 707 aaKnown RBP13.49□□□□□ -0.25
VCX3A-202ENST00000398729 LRRC49Q8IUZ0 686 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 PHACTR4Q8IZ21 702 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 LSM14AQ8ND56 463 aaKnown RBP13.49□□□□□ -0.25
VCX3A-202ENST00000398729 LMX1AQ8TE12 382 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 RFFLQ8WZ73 363 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 NXPE2Q96DL1 559 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 DNAJC7Q99615 494 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 IL12RB2Q99665 862 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 SLC13A1Q9BZW2 595 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 NCKIPSDQ9NZQ3 722 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 LCMT1Q9UIC8 334 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 COL6A6A6NMZ7 2263 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 MYLKQ15746 1914 aa13.49□□□□□ -0.25
VCX3A-202ENST00000398729 A0A1W2PQ67 120 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 SSU72P8A0A1W2PR75 194 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 TRAFD1O14545 582 aaPredicted RBP13.48□□□□□ -0.25
VCX3A-202ENST00000398729 TPP1O14773 563 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 AKR1B10O60218 316 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 MAFKO60675 156 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 SOCS5O75159 536 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 PEX11BO96011 259 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 GP1BAP07359 652 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 ELFN1P0C7U0 828 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 IL4RP24394 825 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 HTR1BP28222 390 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 GJC1P36383 396 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 MMP13P45452 471 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 BLKP51451 505 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 INSM1Q01101 510 aaPredicted RBP13.48□□□□□ -0.25
VCX3A-202ENST00000398729 PPARDQ03181 441 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 RALGDSQ12967 914 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 MMRN1Q13201 1228 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 PRRT3Q5FWE3 981 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 MARC1Q5VT66 337 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 DPPA4Q7L190 304 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 ZNF605Q86T29 641 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 RBFAQ8N0V3 343 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 CACTIN-AS1Q8N1I8 211 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 KCTD6Q8NC69 237 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 FAM71BQ8TC56 605 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 TBATAQ96M53 351 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 NUDCD1Q96RS6 583 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 MGME1Q9BQP7 344 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 SALL4Q9UJQ4 1053 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 CLCA2Q9UQC9 943 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 AK5Q9Y6K8 562 aa13.48□□□□□ -0.25
VCX3A-202ENST00000398729 RECQL5O94762 991 aaPredicted RBP13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PROSCO94903 275 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PCCBP05166 539 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ANXA6P08133 673 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 KRT7P08729 469 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 CD48P09326 243 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 MYF5P13349 255 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 CR2P20023 1033 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 NFKBIAP25963 317 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ARSEP51690 589 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 MTM1Q13496 603 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 INPP5AQ14642 412 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 NFATC4Q14934 902 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PDK2Q15119 407 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ASTE1Q2TB18 679 aaPredicted RBP13.47□□□□□ -0.25
VCX3A-202ENST00000398729 DEFB133Q30KQ1 61 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 RALGPS1Q5JS13 557 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ZFYVE27Q5T4F4 411 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 LIPIQ6XZB0 460 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 VSTM4Q8IW00 320 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 MAP7D3Q8IWC1 876 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PGBD5Q8N414 524 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 RNF214Q8ND24 703 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ATL2Q8NHH9 583 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PDCD6IPQ8WUM4 868 aaKnown RBP13.47□□□□□ -0.25
VCX3A-202ENST00000398729 SPOCK2Q92563 424 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 FCRL3Q96P31 734 aaPredicted RBP13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ZNF670Q9BS34 389 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 APOOQ9BUR5 198 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 LRRC61Q9BV99 259 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PACSIN1Q9BY11 444 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 NRSN2Q9GZP1 204 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 TCEAL2Q9H3H9 227 aaPredicted RBP13.47□□□□□ -0.25
VCX3A-202ENST00000398729 ABHD10Q9NUJ1 306 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 PCDHGC4Q9Y5F7 938 aa13.47□□□□□ -0.25
VCX3A-202ENST00000398729 LY6G6EA0A0G2JKS1 128 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms