RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CDH15P55291 814 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 PRAMEF19Q5SWL8 479 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 IQSEC1Q6DN90 963 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 KRT80Q6KB66 452 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 KLC3Q6P597 504 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 DHFR2Q86XF0 187 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 ANKRD60Q9BZ19 345 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 PNPLA3Q9NST1 481 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 MIOSQ9NXC5 875 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 THEGQ9P2T0 379 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 PAGE1O75459 146 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 IGLV3-25P01717 112 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 ATP6V1B2P21281 511 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 GRIA3P42263 894 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 GALNT1Q10472 559 aaPredicted RBP12.76□□□□□ -0.37
SHMT1-205ENST00000395684 MYBPC3Q14896 1274 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 ACAP2Q15057 778 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 PPP4R4Q6NUP7 873 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 KIAA0408Q6ZU52 694 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 LDB1Q86U70 411 aaPredicted RBP12.76□□□□□ -0.37
SHMT1-205ENST00000395684 TMEM86AQ8N2M4 240 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 AFAP1L2Q8N4X5 818 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 SCAMP5Q8TAC9 235 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 MYLPFQ96A32 169 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 PBXIP1Q96AQ6 731 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 RMND5BQ96G75 393 aaPredicted RBP12.76□□□□□ -0.37
SHMT1-205ENST00000395684 RTP3Q9BQQ7 232 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 PAAF1Q9BRP4 392 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 MRGBPQ9NV56 204 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 SFMBT1Q9UHJ3 866 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 CDH9Q9ULB4 789 aa12.76□□□□□ -0.37
SHMT1-205ENST00000395684 A0A0J9YVX5 310 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 FAM155AB1AL88 458 aaPredicted RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 SRP72O76094 671 aaKnown RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 SUPT7LO94864 414 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 RBP1P09455 135 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 BMP2P12643 396 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 IMPDH1P20839 514 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 BDNFP23560 247 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PGFP49763 221 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CDK9P50750 372 aaKnown RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 WNT3AP56704 352 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 YBX1P67809 324 aaKnown RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 MFSD10Q14728 455 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 UGT3A2Q3SY77 523 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 HECTD2Q5U5R9 776 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 FIBCD1Q8N539 461 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ANKFN1Q8N957 763 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 FAM47BQ8NA70 645 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 RIN3Q8TB24 985 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 IRGQQ8WZA9 623 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 TFAP2CQ92754 450 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GAD1Q99259 594 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ALG9Q9H6U8 611 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 MAP10Q9P2G4 905 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CCL22O00626 93 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PPP6CO00743 305 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 DLGAP1O14490 977 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 MSI1O43347 362 aaKnown RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 AKAP10O43572 662 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GNAO1P09471 354 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GPX3P22352 226 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CRYBB1P53674 252 aaPredicted RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CDKN2DP55273 166 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CDH13P55290 713 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 NME5P56597 212 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 SLC14A2Q15849 920 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ZNF678Q5SXM1 525 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GPR158Q5T848 1215 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 HACD2Q6Y1H2 254 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 LPCAT2Q7L5N7 544 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GPR142Q7Z601 462 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ISCA2Q86U28 154 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ERI1Q8IV48 349 aaKnown RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 OR13J1Q8NGT2 312 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 OR2T34Q8NGX1 318 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 OR2T3Q8NH03 318 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 NPLOC4Q8TAT6 608 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 FCRL2Q96LA5 508 aaPredicted RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PRKD2Q9BZL6 878 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 IL1RL2Q9HB29 575 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ARMC1Q9NVT9 282 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 MPP6Q9NZW5 540 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 VWA7Q9Y334 891 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CENPFP49454 3210 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PLXNB2O15031 1838 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PDHXO00330 501 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 UGT1A6P19224 532 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 HOXC13P31276 330 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ACADVLP49748 655 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 PRAMEP78395 509 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 MANEALQ5VSG8 457 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 IL31Q6EBC2 164 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 KDELC1Q6UW63 502 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 ERMP1Q7Z2K6 904 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 C19orf60Q96EN9 201 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 GPATCH1Q9BRR8 931 aaKnown RBP12.75□□□□□ -0.37
SHMT1-205ENST00000395684 EFHD1Q9BUP0 239 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 AKTIPQ9H8T0 292 aa12.75□□□□□ -0.37
SHMT1-205ENST00000395684 CLK4Q9HAZ1 481 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms