RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 SLC22A2O15244 555 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 PGM1P36871 562 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 GLRBP48167 497 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 DLG1Q12959 904 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 RALGPS1Q5JS13 557 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 DNAJB7Q7Z6W7 309 aaPredicted RBP23.2■■□□□ 1.3
VPS16-201ENST00000380443 SLC22A9Q8IVM8 553 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 BLOC1S5Q8TDH9 187 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 GPAMQ9HCL2 828 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 SCUBE2Q9NQ36 999 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 ASB3Q9Y575 518 aa23.2■■□□□ 1.3
VPS16-201ENST00000380443 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 CD3EAPO15446 510 aaKnown RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 ADSLP30566 484 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 PPM1AP35813 382 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 NUMBP49757 651 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 ARSDP51689 593 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 NAGLUP54802 743 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 PFKPQ01813 784 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 TECRLQ5HYJ1 363 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 RBM20Q5T481 1227 aaKnown RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 SEL1L3Q68CR1 1132 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 CCDC28BQ9BUN5 200 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 RNF38Q9H0F5 515 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 DENND2DQ9H6A0 471 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 DCLRE1BQ9H816 532 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 GKN1Q9NS71 199 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 INTS10Q9NVR2 710 aaKnown RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 NLE1Q9NVX2 485 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 SSX2IPQ9Y2D8 614 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 LTBP2Q14767 1821 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 TTC24A2A3L6 582 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 TYW5A2RUC4 315 aaKnown RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 WISP3O95389 354 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 PIGNO95427 931 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 TWF1Q12792 350 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 UBAP2LQ14157 1087 aaKnown RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 ARL13AQ5H913 290 aaPredicted RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 VWCEQ96DN2 955 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 FAR2Q96K12 515 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 TBATAQ96M53 351 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 TCF12Q99081 682 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 OLFM1Q99784 485 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 TACO1Q9BSH4 297 aaKnown RBP23.19■■□□□ 1.3
VPS16-201ENST00000380443 MRGBPQ9NV56 204 aa23.19■■□□□ 1.3
VPS16-201ENST00000380443 F8W8V4 182 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 PEX11AO75192 247 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 MBL2P11226 248 aaPredicted RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 TFEBP19484 476 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 CCNG1P51959 295 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 GALNT1Q10472 559 aaPredicted RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 USP4Q13107 963 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 ZNF460Q14592 562 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 CYTH1Q15438 398 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 TAF1AQ15573 450 aaPredicted RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 INO80DQ53TQ3 878 aaPredicted RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 HJURPQ8NCD3 748 aaPredicted RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 RBM15BQ8NDT2 890 aaKnown RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 OR52K2Q8NGK3 314 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 OR4L1Q8NH43 312 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 TCF7L2Q9NQB0 619 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 MRPL17Q9NRX2 175 aaKnown RBP23.18■■□□□ 1.3
VPS16-201ENST00000380443 CATSPERZQ9NTU4 200 aa23.18■■□□□ 1.3
VPS16-201ENST00000380443 AURKAO14965 403 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 GOT2P00505 430 aaKnown RBP23.17■■□□□ 1.3
VPS16-201ENST00000380443 KDSRQ06136 332 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 CSHL1Q14406 222 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 ZNF789Q5FWF6 425 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 C6orf163Q5TEZ5 329 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 RNF219Q5W0B1 726 aaPredicted RBP23.17■■□□□ 1.3
VPS16-201ENST00000380443 ACAD11Q709F0 780 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 AFAP1L2Q8N4X5 818 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 ADGRE3Q9BY15 652 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 EML4Q9HC35 981 aaKnown RBP23.17■■□□□ 1.3
VPS16-201ENST00000380443 VPS9D1Q9Y2B5 631 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 INSL5Q9Y5Q6 135 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 C2orf81A6NN90 581 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 TM7SF2O76062 418 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 F11P03951 625 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 GLDCP23378 1020 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 SUOXP51687 545 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 COPAP53621 1224 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 GALNT3Q14435 633 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 TYSND1Q2T9J0 566 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 DNAJC1Q96KC8 554 aaKnown RBP23.17■■□□□ 1.3
VPS16-201ENST00000380443 NDNQ99608 321 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 TDRD1Q9BXT4 1180 aaKnown RBP23.17■■□□□ 1.3
VPS16-201ENST00000380443 MUC3BQ9H195 1237 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 PLA2G4CQ9UP65 541 aa23.17■■□□□ 1.3
VPS16-201ENST00000380443 CCDC162PA2VCL2 907 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 C2orf78A6NCI8 922 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 TRPC5OSA6NMA1 111 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 PFDN6O15212 129 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 OLFM2O95897 454 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 CCDC166P0CW27 439 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 FDXRP22570 491 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 SCNN1BP51168 640 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 CXorf57Q6NSI4 855 aaKnown RBP23.16■■□□□ 1.3
VPS16-201ENST00000380443 AFTPHQ6ULP2 937 aa23.16■■□□□ 1.3
VPS16-201ENST00000380443 NET1Q7Z628 596 aaPredicted RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms