RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 OR1E1P30953 314 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PPARGP37231 505 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SGSHP51688 502 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PRKAA2P54646 552 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 DNAJB13P59910 316 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 LBRQ14739 615 aaKnown RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SFT2D3Q587I9 215 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PELI3Q8N2H9 469 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 RNF148Q8N7C7 305 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 DBF4BQ8NFT6 615 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 OR13C4Q8NGS5 318 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 OR6P1Q8NGX9 317 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ZBTB26Q9HCK0 441 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 CDYLQ9Y232 598 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 RAMP2O60895 175 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ZDHHC11BP0C7U3 371 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ATP5F1P24539 256 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 CALRP27797 417 aaKnown RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 THOP1P52888 689 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PKNOX1P55347 436 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 MS4A2Q01362 244 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 PTPRRQ15256 657 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 KIAA0408Q6ZU52 694 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ISCA2Q86U28 154 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 KBTBD6Q86V97 674 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ATP6V0D2Q8N8Y2 350 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SPPL2BQ8TCT7 592 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 SREK1Q8WXA9 508 aaKnown RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 GATA6Q92908 595 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 FAM193BQ96PV7 902 aaPredicted RBP13.44□□□□□ -0.26
CCDC3-202ENST00000378839 ECSITQ9BQ95 431 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 VWA7Q9Y334 891 aa13.44□□□□□ -0.26
CCDC3-202ENST00000378839 LRRC14BA6NHZ5 514 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 PAPSS2O95340 614 aaPredicted RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 XRCC1P18887 633 aaPredicted RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 IL10RBQ08334 325 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 CEACAM7Q14002 265 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 C6orf163Q5TEZ5 329 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 TMEM154Q6P9G4 183 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 DHDDSQ86SQ9 333 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 OR7D4Q8NG98 312 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 PDCD6IPQ8WUM4 868 aaKnown RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 USP13Q92995 863 aaPredicted RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 GLT1D1Q96MS3 346 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 NPAS2Q99743 824 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 DDX50Q9BQ39 737 aaKnown RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 ZBED2Q9BTP6 218 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 MFSD1Q9H3U5 465 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 EBF3Q9H4W6 596 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 GSTO2Q9H4Y5 243 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 TMEM161AQ9NX61 479 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 PRAMEF11O60813 436 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 FKBP6O75344 327 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 GOT2P00505 430 aaKnown RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 RPL17P18621 184 aaKnown RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 PEX2P28328 305 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 HOXD9P28356 352 aaPredicted RBP13.43□□□□□ -0.26
CCDC3-202ENST00000378839 KLC1Q07866 573 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 ZNF423Q2M1K9 1284 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 IL31Q6EBC2 164 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 AAGABQ6PD74 315 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 CRIPAKQ8N1N5 446 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 ARHGAP18Q8N392 663 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 WBP2Q969T9 261 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 CDRT15Q96T59 188 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 PPP1R12CQ9BZL4 782 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 ALG9Q9H6U8 611 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 GTSE1Q9NYZ3 720 aa13.43□□□□□ -0.26
CCDC3-202ENST00000378839 A0A0U1RQS6 177 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CCDC162PA2VCL2 907 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 H3BNC9 293 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SLC7A4O43246 635 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 TLR5O60602 858 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 IPO13O94829 963 aaKnown RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 GJB5O95377 273 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 LTA4HP09960 611 aaKnown RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 THRAP10827 490 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 TACR2P21452 398 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CLCN5P51795 746 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 GPR17Q13304 367 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CYLC2Q14093 348 aaPredicted RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 OR52E8Q6IFG1 317 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 GK5Q6ZS86 529 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 BLOC1S5Q8TDH9 187 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 PPP1R2P1Q96PQ5 205 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CCDC28BQ9BUN5 200 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 PIDD1Q9HB75 910 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 TLR8Q9NR97 1041 aaKnown RBP13.42□□□□□ -0.26
CCDC3-202ENST00000378839 VTI1BQ9UEU0 232 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 IKZF3Q9UKT9 509 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SPO11Q9Y5K1 396 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SLC4A1P02730 911 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 RAG1P15918 1043 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SLC12A2P55011 1212 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 SP3Q02447 781 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 ASPHQ12797 758 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 PIGGQ5H8A4 983 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 CLEC6AQ6EIG7 209 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 FUT10Q6P4F1 479 aa13.42□□□□□ -0.26
CCDC3-202ENST00000378839 ACAD11Q709F0 780 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms