RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 R3HDM2Q9Y2K5 976 aaKnown RBP13.44□□□□□ -0.26
VPS28-202ENST00000377348 POM121BA6NF01 834 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 TLR4O00206 839 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 SLC30A4O14863 429 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 PRLP01236 227 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 ALPIP09923 528 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 RBP3P10745 1247 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 NFKB1P19838 968 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 CES1P23141 567 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 LIMK1P53667 647 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 KLF1Q13351 362 aaPredicted RBP13.43□□□□□ -0.26
VPS28-202ENST00000377348 XRCC4Q13426 336 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 SEL1L2Q5TEA6 688 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 DPPA4Q7L190 304 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 KDELC2Q7Z4H8 507 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 SPATS2Q86XZ4 545 aaKnown RBP13.43□□□□□ -0.26
VPS28-202ENST00000377348 ZNF567Q8N184 647 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 OR13H1Q8NG92 308 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 SPATA22Q8NHS9 363 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 SPOCK2Q92563 424 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 IMP4Q96G21 291 aaKnown RBP13.43□□□□□ -0.26
VPS28-202ENST00000377348 BMFQ96LC9 184 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 ZDHHC5Q9C0B5 715 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 MBNL1Q9NR56 388 aaKnown RBP13.43□□□□□ -0.26
VPS28-202ENST00000377348 KLHL8Q9P2G9 620 aaPredicted RBP13.43□□□□□ -0.26
VPS28-202ENST00000377348 PHTF1Q9UMS5 762 aa13.43□□□□□ -0.26
VPS28-202ENST00000377348 FNDC3AQ9Y2H6 1198 aaKnown RBP13.43□□□□□ -0.26
VPS28-202ENST00000377348 A0A1W2PQ67 120 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 GOLGA6L9A6NEM1 432 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 NPIPB15A6NHN6 443 aaPredicted RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 USP27XA6NNY8 438 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 LZTS3O60299 673 aaPredicted RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 MT-CYBP00156 380 aaPredicted RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 ELFN1P0C7U0 828 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 THEGLP0DJG4 465 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 GM2AP17900 193 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 LHCGRP22888 699 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 VIPR1P32241 457 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 IGFALSP35858 605 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 NXPH1P58417 271 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 IL9RQ01113 521 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 CNGA3Q16281 694 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 PCSK7Q16549 785 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 DENND2CQ68D51 928 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 DARS2Q6PI48 645 aaKnown RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 LIPIQ6XZB0 460 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 PID1Q7Z2X4 250 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 PTAR1Q7Z6K3 402 aaPredicted RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 TSPAN33Q86UF1 283 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 ZSCAN30Q86W11 494 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 CDKL3Q8IVW4 592 aaPredicted RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 MFSD2AQ8NA29 543 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 LPCAT1Q8NF37 534 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 ASB12Q8WXK4 309 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 ATG4AQ8WYN0 398 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 KLHDC7BQ96G42 594 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 LENG8Q96PV6 779 aaPredicted RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 TLR10Q9BXR5 811 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 SLC25A51Q9H1U9 297 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 CAAP1Q9H8G2 361 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 PCDH9Q9HC56 1237 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 DNAAF2Q9NVR5 837 aaKnown RBP13.42□□□□□ -0.26
VPS28-202ENST00000377348 DLL3Q9NYJ7 618 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 UBP1Q9NZI7 540 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 PYCARDQ9ULZ3 195 aa13.42□□□□□ -0.26
VPS28-202ENST00000377348 DCDC2BA2VCK2 349 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 A6NNZ2 444 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ENC1O14682 589 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 KCNN4O15554 427 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ZSCAN12O43309 604 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 MTSS1O43312 755 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 OPHN1O60890 802 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 RECQL5O94762 991 aaPredicted RBP13.41□□□□□ -0.26
VPS28-202ENST00000377348 CER1O95813 267 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 CA4P22748 312 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 HNF1BP35680 557 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ID4P47928 161 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 EPHB1P54762 984 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 GALNT3Q14435 633 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ACOX1Q15067 660 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 IRF4Q15306 451 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ZNF423Q2M1K9 1284 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 WSCD2Q2TBF2 565 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 TPRG1LQ5T0D9 272 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 IL27RAQ6UWB1 636 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 Q6ZSR6 202 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ABI3BPQ7Z7G0 1075 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 IQCHQ86VS3 1027 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 SLC13A5Q86YT5 568 aaPredicted RBP13.41□□□□□ -0.26
VPS28-202ENST00000377348 SLC22A18ASQ8N1D0 253 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 TP53I13Q8NBR0 393 aaPredicted RBP13.41□□□□□ -0.26
VPS28-202ENST00000377348 DENND6BQ8NEG7 585 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 SKA1Q96BD8 255 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 TADA1Q96BN2 335 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 CENPTQ96BT3 561 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 SCRN2Q96FV2 425 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 MCCC1Q96RQ3 725 aaPredicted RBP13.41□□□□□ -0.26
VPS28-202ENST00000377348 TRIB3Q96RU7 358 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 CARD9Q9H257 536 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 GDF3Q9NR23 364 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms