RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PIGZQ86VD9 579 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 APLFQ8IW19 511 aaPredicted RBP13.76□□□□□ -0.21
COL4A1-201ENST00000375820 CERS4Q9HA82 394 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 POLE3Q9NRF9 147 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 ERGIC3Q9Y282 383 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 ZNF780BQ9Y6R6 833 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 CHADO15335 359 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 FAM155BO75949 473 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 RPL7AP62424 266 aaKnown RBP13.76□□□□□ -0.21
COL4A1-201ENST00000375820 PREPLQ4J6C6 727 aaPredicted RBP13.76□□□□□ -0.21
COL4A1-201ENST00000375820 INTS11Q5TA45 600 aaKnown RBP13.76□□□□□ -0.21
COL4A1-201ENST00000375820 BROXQ5VW32 411 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 GK5Q6ZS86 529 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 MAP4K3Q8IVH8 894 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 RASSF1Q9NS23 344 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 XPR1Q9UBH6 696 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 CASZ1Q86V15 1759 aa13.76□□□□□ -0.21
COL4A1-201ENST00000375820 A0A1W2PPM1 405 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 UBE2QL1A1L167 161 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 DBIP07108 87 aaKnown RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TGFB3P10600 412 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RGS1Q08116 209 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 IL18R1Q13478 541 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 CAMK1DQ8IU85 385 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 DCBLD1Q8N8Z6 715 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TRPV3Q8NET8 790 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ZHX1-C8orf76Q96EF9 292 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 KAZALD1Q96I82 304 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TPK1Q9H3S4 243 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 PSMD13Q9UNM6 376 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RFXANKO14593 260 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 MDM4O15151 490 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 C9P02748 559 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 MAPTP10636 758 aaKnown RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ANPEPP15144 967 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 SKP1P63208 163 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RALGPS2Q86X27 583 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 MRPL45Q9BRJ2 306 aaKnown RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RPS6KA6Q9UK32 745 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3DA0A087WVF3 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3IA0A087WXS9 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3EA0A087X179 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3KA0A087X1G2 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3FA6NER0 549 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 SIGLEC16A6NMB1 481 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3LB9A6J9 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 STX16-NPEPL1H3BU86 382 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 STX16O14662 325 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3HP0C7X1 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 PCDH1Q08174 1060 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 BST1Q10588 318 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RGS21Q2M5E4 152 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ALG11Q2TAA5 492 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 LDLRAP1Q5SW96 308 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3GQ6DHY5 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3CQ6IPX1 549 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TBC1D3Q8IZP1 549 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 EPS8L1Q8TE68 723 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 JSRP1Q96MG2 331 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TMLHEQ9NVH6 421 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 CD163L1Q9NR16 1453 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 C9JVG2 144 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ALAS2P22557 587 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 MC1RQ01726 317 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 LIN54Q6MZP7 749 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 TRIM40Q6P9F5 258 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ALLCQ8N6M5 410 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ZNF558Q96NG5 402 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 GAL3ST1Q99999 423 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 NEK6Q9HC98 313 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 SLCO1B3Q9NPD5 702 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 GPN3Q9UHW5 284 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 LEF1Q9UJU2 399 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 RBMX2Q9Y388 322 aaKnown RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 PCDHB9Q9Y5E1 797 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 DGKBQ9Y6T7 804 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 CEP152O94986 1710 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 NKAPQ8N5F7 415 aaKnown RBP13.75□□□□□ -0.21
COL4A1-201ENST00000375820 ASB2Q96Q27 587 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 BRINP2Q9C0B6 783 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 PRDM12Q9H4Q4 367 aa13.75□□□□□ -0.21
COL4A1-201ENST00000375820 YDJCA8MPS7 323 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 PRODHO43272 600 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 RLN1P04808 185 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 OR4Q2P0C623 313 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 AXLP30530 894 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 RPL9P32969 192 aaKnown RBP13.74□□□□□ -0.21
COL4A1-201ENST00000375820 CELF3Q5SZQ8 465 aaKnown RBP13.74□□□□□ -0.21
COL4A1-201ENST00000375820 ABRAXAS1Q6UWZ7 409 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 LDB1Q86U70 411 aaPredicted RBP13.74□□□□□ -0.21
COL4A1-201ENST00000375820 WBP11Q9Y2W2 641 aaKnown RBP13.74□□□□□ -0.21
COL4A1-201ENST00000375820 UNC13BO14795 1591 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 FGF10O15520 208 aaPredicted RBP13.74□□□□□ -0.21
COL4A1-201ENST00000375820 ADSSP30520 456 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 STAT5AP42229 794 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 MANFP55145 182 aaKnown RBP13.74□□□□□ -0.21
COL4A1-201ENST00000375820 CERCAMQ5T4B2 595 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 VCPIP1Q96JH7 1222 aa13.74□□□□□ -0.21
COL4A1-201ENST00000375820 PORCNQ9H237 461 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms