RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HS3ST2Q9Y278 367 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 PCDHB9Q9Y5E1 797 aa13.84□□□□□ -0.19
PTPRF-202ENST00000372405 FAM95CA0A1B0GW59 222 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 TRAFD1O14545 582 aaPredicted RBP13.83□□□□□ -0.19
PTPRF-202ENST00000372405 PHGDHO43175 533 aaKnown RBP13.83□□□□□ -0.19
PTPRF-202ENST00000372405 RPP40O75818 363 aaKnown RBP13.83□□□□□ -0.19
PTPRF-202ENST00000372405 GLP2RO95838 553 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 GOT2P00505 430 aaKnown RBP13.83□□□□□ -0.19
PTPRF-202ENST00000372405 SLC35E2BP0CK96 405 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 PSMA3P25788 255 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 VIPR2P41587 438 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 CD151P48509 253 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 PRAMEP78395 509 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 IRX4P78413 519 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 SEMA3AQ14563 771 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 INSCQ1MX18 579 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 RBM20Q5T481 1227 aaKnown RBP13.83□□□□□ -0.19
PTPRF-202ENST00000372405 TMEM215Q68D42 235 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 OTOAQ7RTW8 1153 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 GLT6D1Q7Z4J2 308 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 ADIPOR2Q86V24 386 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 NPAS3Q8IXF0 933 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 CALML6Q8TD86 181 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 STYXQ8WUJ0 223 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 PIH1D2Q8WWB5 315 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 MYLIPQ8WY64 445 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 ASIC4Q96FT7 647 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 ABHD8Q96I13 439 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 C1QTNF1Q9BXJ1 281 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 ADGRE3Q9BY15 652 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 SFXN1Q9H9B4 322 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 NLE1Q9NVX2 485 aaPredicted RBP13.83□□□□□ -0.19
PTPRF-202ENST00000372405 MARK1Q9P0L2 795 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 SIRPGQ9P1W8 387 aa13.83□□□□□ -0.19
PTPRF-202ENST00000372405 SCN8AQ9UQD0 1980 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 PIGNO95427 931 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 S1PR4O95977 384 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 PROCP04070 461 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 MPOP05164 745 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 BPGMP07738 259 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 PRSS56P0CW18 603 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 PABPC1P11940 636 aaKnown RBP13.83□□□□□ -0.2
PTPRF-202ENST00000372405 SAT1P21673 171 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 HADHAP40939 763 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 ABL2P42684 1182 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 CSNK1DP48730 415 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 LAMB3Q13751 1172 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 ZNF460Q14592 562 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 USP10Q14694 798 aaKnown RBP13.83□□□□□ -0.2
PTPRF-202ENST00000372405 TAF1AQ15573 450 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-202ENST00000372405 TRIM68Q6AZZ1 485 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 ELMSAN1Q6PJG2 1045 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 TTC30BQ8N4P2 665 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 CELF5Q8N6W0 485 aaKnown RBP13.83□□□□□ -0.2
PTPRF-202ENST00000372405 CCDC197Q8NCU1 140 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 OR4K2Q8NGD2 314 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 OTUB2Q96DC9 234 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 CDKN2AIPNLQ96HQ2 116 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 APOL5Q9BWW9 433 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 MSRAQ9UJ68 235 aa13.83□□□□□ -0.2
PTPRF-202ENST00000372405 CXorf51AA0A1B0GTR3 108 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 HTRA2O43464 458 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 PGLSO95336 258 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 CRTAMO95727 393 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 WEE1P30291 646 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 TAS2R39P59534 338 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 SLC20A2Q08357 652 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 TCEAL5Q5H9L2 206 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 FAM78AQ5JUQ0 283 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 SPATA21Q7Z572 469 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 KIAA0907Q7Z7F0 614 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 GALNT7Q86SF2 657 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 EFHBQ8N7U6 833 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 NAT16Q8N8M0 369 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 ST13P5Q8NFI4 369 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 EID2BQ96D98 161 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 MYO19Q96H55 970 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 CABS1Q96KC9 395 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 NDNQ99608 321 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 OMDQ99983 421 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 SLCO3A1Q9UIG8 710 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 STARD13Q9Y3M8 1113 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 USP15Q9Y4E8 981 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 DOCK8Q8NF50 2099 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 KLF11O14901 512 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 SLC4A1P02730 911 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 CYP17A1P05093 508 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 IFT88Q13099 833 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 PCLAFQ15004 111 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 DHCR24Q15392 516 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 RARS2Q5T160 578 aaKnown RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 C22orf39Q6P5X5 142 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 ZSWIM9Q86XI8 627 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 CENPLQ8N0S6 344 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 GPATCH11Q8N954 259 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 CCDC63Q8NA47 563 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 OR2AP1Q8NGE2 309 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 GPR150Q8NGU9 434 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 FGF13Q92913 245 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 THOC1Q96FV9 657 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms