RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GRIA4P48058 902 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 CLDN2P57739 230 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 ERAP2Q6P179 960 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 DARS2Q6PI48 645 aaKnown RBP15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 SLC13A5Q86YT5 568 aaPredicted RBP15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 CDKL3Q8IVW4 592 aaPredicted RBP15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 TMEM145Q8NBT3 493 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 UBE2Q2Q8WVN8 375 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 ATG4AQ8WYN0 398 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 GTPBP2Q9BX10 602 aaKnown RBP15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 C1QTNF2Q9BXJ5 285 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 SLC25A51Q9H1U9 297 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 KLHL8Q9P2G9 620 aaPredicted RBP15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 PHTF1Q9UMS5 762 aa15.16■□□□□ 0.02
SMPDL3A-201ENST00000368440 CACNA1EQ15878 2313 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 PRAMEF26H0Y7S4 382 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 ARHGAP33O14559 1287 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 CDX4O14627 284 aaPredicted RBP15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 URI1O94763 535 aaPredicted RBP15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 ALPIP09923 528 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 C6P13671 934 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 HNRNPA2B1P22626 353 aaKnown RBP15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 LIG3P49916 1009 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 POLR2LP62875 67 aaKnown RBP15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 LMNB2Q03252 620 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 GCNT7Q6ZNI0 430 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 DPPA4Q7L190 304 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 TADA1Q96BN2 335 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 KLF6Q99612 283 aaPredicted RBP15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 USP29Q9HBJ7 922 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 PCDH9Q9HC56 1237 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 UBP1Q9NZI7 540 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 ANKRD6Q9Y2G4 727 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 SNX11Q9Y5W9 270 aa15.15■□□□□ 0.02
SMPDL3A-201ENST00000368440 A0A1W2PQ67 120 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 NPIPB15A6NHN6 443 aaPredicted RBP15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 KCNN4O15554 427 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 MTSS1O43312 755 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 TM7SF2O76062 418 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 GM2AP17900 193 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 LHCGRP22888 699 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 NUDT1P36639 197 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 KIF19Q2TAC6 998 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 LIPIQ6XZB0 460 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 PID1Q7Z2X4 250 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 TSPAN33Q86UF1 283 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 TTC13Q8NBP0 860 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 LPCAT1Q8NF37 534 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 SLC35B2Q8TB61 432 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 DNPEPQ9ULA0 475 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 GOLGA8CPA6NN73 597 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 VILLO15195 856 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 FOXD2O60548 495 aaPredicted RBP15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 TUBB4AP04350 444 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 ATP1A1P05023 1023 aaKnown RBP15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 AKT2P31751 481 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 SGCGQ13326 291 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 GALNT3Q14435 633 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 SIX1Q15475 284 aaPredicted RBP15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 TEAD4Q15561 434 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 CNGA3Q16281 694 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 PCSK7Q16549 785 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 KDELC2Q7Z4H8 507 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 MINDY1Q8N5J2 469 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 OXNAD1Q96HP4 312 aaPredicted RBP15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 BMFQ96LC9 184 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 MCCC1Q96RQ3 725 aaPredicted RBP15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 TRIB3Q96RU7 358 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 VAT1Q99536 393 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 GORASP1Q9BQQ3 440 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 IL21RQ9HBE5 538 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 PPIL1Q9Y3C6 166 aa15.14■□□□□ 0.01
SMPDL3A-201ENST00000368440 DNAH14Q0VDD8 3507 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 A0A0J9YYE9 177 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 POM121BA6NF01 834 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 C4orf47A7E2U8 309 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 TRBC1P01850 177 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 SYPP08247 313 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 VIPR1P32241 457 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 HNF1BP35680 557 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 IGFALSP35858 605 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 GDF10P55107 478 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 STAT4Q14765 748 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 ANKRD20A2Q5SQ80 823 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 STPG1Q5TH74 334 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 ANKRD20A1Q5TYW2 823 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 ANKRD20A3Q5VUR7 823 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 TP53I13Q8NBR0 393 aaPredicted RBP15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 CCDC110Q8TBZ0 833 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 C1orf54Q8WWF1 131 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 ASB12Q8WXK4 309 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 SCRN2Q96FV2 425 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 TMEM9BQ9NQ34 198 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 MBNL1Q9NR56 388 aaKnown RBP15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 JRKLQ9Y4A0 524 aa15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 PTPRZ1P23471 2315 aaPredicted RBP15.13■□□□□ 0.01
SMPDL3A-201ENST00000368440 CTAGE9A4FU28 777 aa15.12■□□□□ 0.01
SMPDL3A-201ENST00000368440 CEP104O60308 925 aa15.12■□□□□ 0.01
SMPDL3A-201ENST00000368440 PMPCBO75439 489 aa15.12■□□□□ 0.01
SMPDL3A-201ENST00000368440 ELFN1P0C7U0 828 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms