RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PELI3Q8N2H9 469 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 WDTC1Q8N5D0 677 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 PCDH20Q8N6Y1 951 aaKnown RBP8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 PATE1Q8WXA2 126 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 RAB7BQ96AH8 199 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 RTP4Q96DX8 246 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 KLHL32Q96NJ5 620 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 PPP1R9BQ96SB3 815 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 SPON2Q9BUD6 331 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 APOOQ9BUR5 198 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 CEP44Q9C0F1 390 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 APMAPQ9HDC9 416 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 PIGVQ9NUD9 493 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 KLQ9UEF7 1012 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TLK1Q9UKI8 766 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 PCDHA7Q9UN72 937 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 TACC2O95359 2948 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 DNHD1Q96M86 4753 aa8.56□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZNF106Q9H2Y7 1883 aaKnown RBP8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 DNAJB5O75953 348 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 TM7SF2O76062 418 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 SORBS2O94875 1100 aaKnown RBP8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 DDAH2O95865 285 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 FUCA1P04066 466 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 FGF1P05230 155 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 THRAP10827 490 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 BMP6P22004 513 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 ACVRL1P37023 503 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 PEX5P50542 639 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 BLKP51451 505 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 NR1D2Q14995 579 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 EDRF1Q3B7T1 1238 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 ATXN7L2Q5T6C5 722 aaPredicted RBP8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 RRAGAQ7L523 313 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZSCAN30Q86W11 494 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 IRF2BP1Q8IU81 584 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 CCDC13Q8IYE1 715 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 SMYD4Q8IYR2 804 aaPredicted RBP8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 LMO3Q8TAP4 145 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 KREMEN1Q96MU8 473 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 LGR4Q9BXB1 951 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 TRIM55Q9BYV6 548 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 THAP9Q9H5L6 903 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 DONSONQ9NYP3 566 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 SLC12A6Q9UHW9 1150 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 KCND3Q9UK17 655 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 DGKBQ9Y6T7 804 aa8.55□□□□□ -1.04
HMGB1P39-201ENST00000366304 IGLV3-10A0A075B6K4 115 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 B4E171 279 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 KRIT1O00522 736 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 PPM1DO15297 605 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 SART1O43290 800 aaKnown RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 SLC2A3P11169 496 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 GM2AP17900 193 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 TSPAN7P41732 249 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 WDR4P57081 412 aaKnown RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 YWHAEP62258 255 aaKnown RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 CDK17Q00537 523 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 LRRC14Q15048 493 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 MYLK3Q32MK0 819 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 DCAF17Q5H9S7 520 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 ANKRD40Q6AI12 368 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 VASH1Q7L8A9 365 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 SETD3Q86TU7 594 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 TTC7BQ86TV6 843 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 FAM129CQ86XR2 697 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 NLGN4XQ8N0W4 816 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 GUF1Q8N442 669 aaKnown RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 RYBPQ8N488 228 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 Q8NA96 180 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 AGBL5Q8NDL9 886 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 NLGN4YQ8NFZ3 816 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 SLC35C1Q96A29 364 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZNF775Q96BV0 537 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 WDR92Q96MX6 357 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 CPXM1Q96SM3 734 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 DPEP2Q9H4A9 486 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 ATP13A1Q9HD20 1204 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 NDFIP2Q9NV92 336 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 ARHGEF38Q9NXL2 777 aa8.54□□□□□ -1.04
HMGB1P39-201ENST00000366304 ESPL1Q14674 2120 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 CCDC168Q8NDH2 2452 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 IGHV1OR21-1A0A087WYE8 117 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 ILVBLA1L0T0 632 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 TMEM110-MUSTN1A8MSY1 372 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 TOR1BO14657 336 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 INSIG1O15503 277 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 RHOBTB3O94955 611 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 YEATS4O95619 227 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 ECEL1O95672 775 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 DLGAP3O95886 979 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 TNFP01375 233 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 PCCBP05166 539 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 ZNF28P17035 718 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 TCN2P20062 427 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 TBXAS1P24557 533 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 RPL13P26373 211 aaKnown RBP8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 MAP4P27816 1152 aaKnown RBP8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 OR1E1P30953 314 aa8.53□□□□□ -1.04
HMGB1P39-201ENST00000366304 STAT5AP42229 794 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms