RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TWF1Q12792 350 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TCP10Q12799 353 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 SGO1Q5FBB7 561 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CHST15Q7LFX5 561 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF571Q7Z3V5 609 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PHACTR4Q8IZ21 702 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 SLC4A9Q96Q91 983 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 MAU2Q9Y6X3 613 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 BICRAQ9NZM4 1560 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CABYRO75952 493 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 HLA-DRAP01903 254 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 DARSP14868 501 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TAGLNQ01995 201 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 GSTCDQ8NEC7 633 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 IGDCC4Q8TDY8 1250 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 FOLH1BQ9HBA9 442 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 FAM217BQ9NTX9 383 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CPNE3O75131 537 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CSPG5O95196 566 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 LIPEQ05469 1076 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PDSS2Q86YH6 399 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TMEM192Q8IY95 271 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 AP4E1Q9UPM8 1137 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 JCADQ9P266 1359 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 A0A1B0GVI7 797 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 DLGAP1O14490 977 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 GRID2O43424 1007 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 FADS2O95864 444 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 DNAJB1P25685 340 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 VEPH1Q14D04 833 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TEAD4Q15561 434 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 SSX2Q16385 188 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 FAM122CQ6P4D5 195 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 GOLM1Q8NBJ4 401 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 HTR3CQ8WXA8 447 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 MRPL9Q9BYD2 267 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 H0YAE9 185 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PRH1P02810 166 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 IFI30P13284 250 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 IQSEC1Q6DN90 963 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 ADGRG6Q86SQ4 1221 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 SEPT12Q8IYM1 358 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 ATAD1Q8NBU5 361 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PABPC5Q96DU9 382 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TRNT1Q96Q11 434 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 BIN3Q9NQY0 253 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PRMT7Q9NVM4 692 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 H0YIN7 160 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 FGRP09769 529 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CYP2C18P33260 490 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 RPL4P36578 427 aaKnown RBP12.64□□□□□ -0.39
COL6A3-203ENST00000353578 MTHFRP42898 656 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TSPAN33Q86UF1 283 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 LINC00471Q8N535 108 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CEP76Q8TAP6 659 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 METTL6Q8TCB7 284 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 UFD1Q92890 307 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PRKAG2Q9UGJ0 569 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 JAG2Q9Y219 1238 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 TPP1O14773 563 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 SLC2A4P14672 509 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 SMTNL2Q2TAL5 461 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF438Q7Z4V0 828 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 C10orf53Q8N6V4 93 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 KCTD7Q96MP8 289 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 GULP1Q9UBP9 304 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 LRFN2Q9ULH4 789 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CYP1A2P05177 515 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CSH1P0DML2 217 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CSH2P0DML3 217 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 NKAPLQ5M9Q1 402 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF567Q8N184 647 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 C12orf50Q8NA57 414 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 GLB1L3Q8NCI6 653 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 THAP6Q8TBB0 222 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 PPP1R14AQ96A00 147 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CNOT11Q9UKZ1 510 aaKnown RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 TBX20Q9UMR3 447 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 STXBP5LQ9Y2K9 1186 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF608Q9ULD9 1512 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 PMPCBO75439 489 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CAPZA1P52907 286 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 LSM12Q3MHD2 195 aaKnown RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 PLEKHN1Q494U1 663 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ADAMTSL2Q86TH1 951 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 NT5DC4Q86YG4 428 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 GATAD2BQ8WXI9 593 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 DPAGT1Q9H3H5 408 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 KNL1Q8NG31 2342 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 FAM25EA8MYX2 175 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 SLC28A2O43868 658 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 RAB5CP51148 216 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 TRAM1Q15629 374 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 PIK3R6Q5UE93 754 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 LYPLAL1Q5VWZ2 237 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF773Q6PK81 442 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 UBQLNLQ8IYU4 475 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 KIF13AQ9H1H9 1805 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 M0R036 132 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms