RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC29A2Q14542 456 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 MORF4L2Q15014 288 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 ACOX1Q15067 660 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 HSP90AA5PQ58FG0 334 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 DNAJC21Q5F1R6 531 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 PARS2Q7L3T8 475 aaKnown RBP9.26□□□□□ -0.93
USP4-202ENST00000351842 LRRC49Q8IUZ0 686 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 PPM1NQ8N819 430 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 OR4K2Q8NGD2 314 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 CCHCR1Q8TD31 782 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 NUDCD1Q96RS6 583 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 GDF3Q9NR23 364 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 ZDHHC18Q9NUE0 388 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.26□□□□□ -0.93
USP4-202ENST00000351842 B4GALT6Q9UBX8 382 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 SIT1Q9Y3P8 196 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 WASF2Q9Y6W5 498 aa9.26□□□□□ -0.93
USP4-202ENST00000351842 ANKRD66B4E2M5 251 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ERLIN1O75477 346 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 FAM155BO75949 473 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 DNTTP04053 509 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 HNF1BP35680 557 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 CDH17Q12864 832 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 SEMA5AQ13591 1074 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 DMC1Q14565 340 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ELAVL3Q14576 367 aaKnown RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 LONRF1Q17RB8 773 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 NCEH1Q6PIU2 408 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 NAPRTQ6XQN6 538 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 TAS2R42Q7RTR8 314 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 TRIM74Q86UV6 250 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 PHTF2Q8N3S3 785 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 PCDH20Q8N6Y1 951 aaKnown RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 ATXN2LQ8WWM7 1075 aaKnown RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 ART4Q93070 314 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 TTC17Q96AE7 1141 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 STAMBPL1Q96FJ0 436 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ADGRE3Q9BY15 652 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 C8orf33Q9H7E9 229 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 PCDH12Q9NPG4 1184 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 C20orf96Q9NUD7 363 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 HAUS2Q9NVX0 235 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 FBXO10Q9UK96 956 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 EDDM13A0A1B0GTR0 161 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 KANSL1LA0AUZ9 987 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 LZTS3O60299 673 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A9O60656 530 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 PAK4O96013 591 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 SHBGP04278 402 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 GLULP15104 373 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A6P19224 532 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 DRD1P21728 446 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A1P22309 533 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A4P22310 534 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 MAOBP27338 520 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A3P35503 534 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A5P35504 534 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 CTBP1Q13363 440 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 CUL1Q13616 776 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 EIF4HQ15056 248 aaKnown RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 UGP2Q16851 508 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ZRANB3Q5FWF4 1079 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ZNF648Q5T619 568 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 LRRC66Q68CR7 880 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 LAYNQ6UX15 382 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ZNF783Q6ZMS7 281 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 Q6ZVL8 140 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 ZNF534Q76KX8 674 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 TSTD1Q8NFU3 115 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 TBATAQ96M53 351 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 KLF6Q99612 283 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 TSPYL1Q9H0U9 437 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 MIR1-1HGQ9H1L0 117 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 VIPAS39Q9H9C1 493 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A7Q9HAW7 530 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A10Q9HAW8 530 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UGT1A8Q9HAW9 530 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 SPATA6Q9NWH7 488 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 WHRNQ9P202 907 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 THAP10Q9P2Z0 257 aaPredicted RBP9.25□□□□□ -0.93
USP4-202ENST00000351842 CTNNAL1Q9UBT7 734 aa9.25□□□□□ -0.93
USP4-202ENST00000351842 UBA6A0AVT1 1052 aaPredicted RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 STX7O15400 261 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 PRLP01236 227 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 TCF3P15923 654 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ITGB6P18564 788 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 GMPRP36959 345 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ETV3P41162 512 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 CDKN1CP49918 316 aaPredicted RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 PMS2P54278 862 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 MTAPQ13126 283 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 SRSF5Q13243 272 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 CST6Q15828 149 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 KCTD16Q68DU8 428 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 DOK6Q6PKX4 331 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 KDELC1Q6UW63 502 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 SYDE1Q6ZW31 735 aaPredicted RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 MARK2Q7KZI7 788 aaKnown RBP9.24□□□□□ -0.93
USP4-202ENST00000351842 DET1Q7L5Y6 550 aa9.24□□□□□ -0.93
USP4-202ENST00000351842 ZNF557Q8N988 423 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms