RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TDRD5Q8NAT2 981 aaKnown RBP15.38■□□□□ 0.05
SF3B4-201ENST00000271628 ACDQ96AP0 544 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 NSL1Q96IY1 281 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 ELMO2Q96JJ3 720 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 ZNF570Q96NI8 536 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 BTBD10Q9BSF8 475 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 C2orf49Q9BVC5 232 aaPredicted RBP15.38■□□□□ 0.05
SF3B4-201ENST00000271628 MTIF3Q9H2K0 278 aaKnown RBP15.38■□□□□ 0.05
SF3B4-201ENST00000271628 TASP1Q9H6P5 420 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 TLR9Q9NR96 1032 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 ZNF358Q9NW07 568 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 KCNK4Q9NYG8 393 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.38■□□□□ 0.05
SF3B4-201ENST00000271628 CFAP97Q9P2B7 532 aa15.38■□□□□ 0.05
SF3B4-201ENST00000271628 MTCL1Q9Y4B5 1905 aaKnown RBP15.38■□□□□ 0.05
SF3B4-201ENST00000271628 A0A087X1B8 175 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 KIF1CO43896 1103 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 H2AFYO75367 372 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 TMCC1O94876 653 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SLC35E2BP0CK96 405 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SLC1A6P48664 564 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 KPNA2P52292 529 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 PRKAA2P54646 552 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 IRF9Q00978 393 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 NAA25Q14CX7 972 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 TSNAXIP1Q2TAA8 658 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 MRNIPQ6NTE8 343 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 METTL3Q86U44 580 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SLC41A1Q8IVJ1 513 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 WDR75Q8IWA0 830 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SPPL3Q8TCT6 385 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 PPP4R1Q8TF05 950 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SKA1Q96BD8 255 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 TSPAN17Q96FV3 270 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 EXOC2Q96KP1 924 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 C1QTNF1Q9BXJ1 281 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 DCLRE1BQ9H816 532 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 KCNK13Q9HB14 408 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 LRRC42Q9Y546 428 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 C2orf81A6NN90 581 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 HIDE1A8MVS5 230 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 LEFTY2O00292 366 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 CCL16O15467 120 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SNAP91O60641 907 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 RPP40O75818 363 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 PTPN2P17706 415 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 EN2P19622 333 aaPredicted RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 CSKP41240 450 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 ZBTB16Q05516 673 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 FAM91A1Q658Y4 838 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 ZCCHC23Q6ZST2 131 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 ARID3BQ8IVW6 561 aaPredicted RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 TTC16Q8NEE8 873 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 GPR150Q8NGU9 434 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 PIWIL2Q8TC59 973 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 MICAL1Q8TDZ2 1067 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 USP13Q92995 863 aaPredicted RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 PTCD3Q96EY7 689 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 ALG14Q96F25 216 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 TBATAQ96M53 351 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 SLC46A2Q9BY10 475 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 FAM96AQ9H5X1 160 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 FBXO6Q9NRD1 293 aaPredicted RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 KIAA1522Q9P206 1035 aaPredicted RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 DNMT3BQ9UBC3 853 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 NKX1-2Q9UD57 310 aaPredicted RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 ARHGAP26Q9UNA1 814 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 RUVBL2Q9Y230 463 aaKnown RBP15.37■□□□□ 0.05
SF3B4-201ENST00000271628 RAI2Q9Y5P3 530 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 ARL5AQ9Y689 179 aa15.37■□□□□ 0.05
SF3B4-201ENST00000271628 E2F8A0AVK6 867 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 LCHNA4D1U4 455 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 SOBPA7XYQ1 873 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 SCAMP3O14828 347 aaKnown RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 PHGDHO43175 533 aaKnown RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 KLHL2O95198 593 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 CYBBP04839 570 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 HOXB8P17481 243 aaPredicted RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 AVPR1AP37288 418 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 EPHA5P54756 1037 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 TAF1AQ15573 450 aaPredicted RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 CNSTQ6PJW8 725 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 LINGO4Q6UY18 593 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 SDCCAG8Q86SQ7 713 aaPredicted RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 BBS7Q8IWZ6 715 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 TNS4Q8IZW8 715 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 SLC22A17Q8WUG5 538 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 SCG3Q8WXD2 468 aaKnown RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 OMDQ99983 421 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 TMEM120AQ9BXJ8 343 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 DENND2DQ9H6A0 471 aaPredicted RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 VPS51Q9UID3 782 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 CORO1CQ9ULV4 474 aaPredicted RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 NUMBLQ9Y6R0 609 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 CXorf51AA0A1B0GTR3 108 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 ANKRD66B4E2M5 251 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 G3V2L1 256 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 TRIM13O60858 407 aa15.36■□□□□ 0.05
SF3B4-201ENST00000271628 ATP5BP06576 529 aaKnown RBP15.36■□□□□ 0.05
SF3B4-201ENST00000271628 MYL2P10916 166 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms