RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CCNT2O60583 730 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 NCK1P16333 377 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 HDCP19113 662 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 RPS6KA3P51812 740 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 LBX2Q6XYB7 198 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ZDHHC13Q8IUH4 622 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 KBTBD2Q8IY47 623 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SPATA17Q96L03 361 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 DPY30Q9C005 99 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 RERGLQ9H628 205 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 LIN28AQ9H9Z2 209 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SIRPGQ9P1W8 387 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SLC22A3O75751 556 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 KRT8P05787 483 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CPT1AP50416 773 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 KRT33BQ14525 404 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 VPS26BQ4G0F5 336 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 TAC4Q86UU9 113 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 TTC30AQ86WT1 665 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CCDC103Q8IW40 242 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 FSTL5Q8N475 847 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 LZTR1Q8N653 840 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 OR2T34Q8NGX1 318 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 OR2T3Q8NH03 318 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 MTFMTQ96DP5 389 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 VAT1Q99536 393 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ABHD16BQ9H3Z7 469 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 MARCH2Q9P0N8 246 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 RCOR3Q9P2K3 495 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 RHOCP08134 193 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CTPS1P17812 591 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PBLDP30039 288 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 LIPEQ05469 1076 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 DPYSQ14117 519 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 NFE2Q16621 373 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 DDR2Q16832 855 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SFRP1Q8N474 314 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 STAG3L4Q8TBR4 150 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PRDM16Q9HAZ2 1276 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PREBQ9HCU5 417 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CNGB3Q9NQW8 809 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 FAM32AQ9Y421 112 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 FGF10O15520 208 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 H6PDO95479 791 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 NADKO95544 446 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PIGRP01833 764 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 HIST1H2AGP0C0S8 130 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 MBL2P11226 248 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 GM2AP17900 193 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 HIST1H2ADP20671 130 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 EPHX2P34913 555 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 TSNQ15631 228 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CCDC85BQ15834 202 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 FSCN1Q16658 493 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 OSTM1Q86WC4 334 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PGAM4Q8N0Y7 254 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 MAGED4Q96JG8 741 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 HIST1H2AHQ96KK5 128 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SMAD5Q99717 465 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 HIST1H2AJQ99878 128 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ADAM2Q99965 735 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 H2AFJQ9BTM1 129 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 MOSPD1Q9UJG1 213 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 TCAF1Q9Y4C2 921 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 DLEC1Q9Y238 1755 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CCDC162PA2VCL2 907 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ZNF37AP17032 561 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PRKCHP24723 683 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 GALNT5Q7Z7M9 940 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SH3GL1Q99961 368 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SLC39A3Q9BRY0 314 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 OSBPL11Q9BXB4 747 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ABCG8Q9H221 673 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.63□□□□□ -1.672e-9■■■■□ 24.9
VPS13C-201ENST00000249837 RAD54BQ9Y620 910 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 UBXN8O00124 270 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 KPNA4O00629 521 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SERPIND1P05546 499 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CYP4B1P13584 511 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PSMD7P51665 324 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ITGA7Q13683 1181 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PTPRCAPQ14761 206 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 DEPDC1Q5TB30 811 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CLYBLQ8N0X4 340 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 UGT2B28Q9BY64 529 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 VPS28Q9UK41 221 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CNOT6Q9ULM6 557 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 NPEPPSL1A6NEC2 478 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 GPR182O15218 404 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 VPS4BO75351 444 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 LRATO95237 230 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 DBTP11182 482 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 LILRA4P59901 499 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 TRIM25Q14258 630 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 SNX17Q15036 470 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 FAM98BQ52LJ0 330 aaKnown RBP4.63□□□□□ -1.67
VPS13C-201ENST00000249837 ZNF280DQ6N043 979 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 CNSTQ6PJW8 725 aa4.63□□□□□ -1.67
VPS13C-201ENST00000249837 OLFML1Q6UWY5 402 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms