RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 TMC8Q8IU68 726 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 FAM217AQ8IXS0 508 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 HJURPQ8NCD3 748 aaPredicted RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 MIPEPQ99797 713 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 FEM1AQ9BSK4 669 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 CCDC106Q9BWC9 280 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 VWA7Q9Y334 891 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 NRG2O14511 850 aaPredicted RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 CD3EAPO15446 510 aaKnown RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 TMCC1O94876 653 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 LUC7L3O95232 432 aaKnown RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 GLP2RO95838 553 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 GRIA4P48058 902 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 ALDH18A1P54886 795 aaKnown RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 HTRA4P83105 476 aaPredicted RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 USP4Q13107 963 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 NECAB2Q7Z6G3 386 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 LONP2Q86WA8 852 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 WFDC5Q8TCV5 224 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 MRPL57Q9BQC6 102 aaKnown RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 DRC3Q9H069 523 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 CDH19Q9H159 772 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 MRPL46Q9H2W6 279 aaKnown RBP18.56■□□□□ 0.56
HOXC11-201ENST00000243082 FAM96AQ9H5X1 160 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 ACSS2Q9NR19 701 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 STK39Q9UEW8 545 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 BAIAP2L1Q9UHR4 511 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 PCDHGC4Q9Y5F7 938 aa18.56■□□□□ 0.56
HOXC11-201ENST00000243082 KIAA0100Q14667 2235 aaKnown RBP18.55■□□□□ 0.56
HOXC11-201ENST00000243082 WISP3O95389 354 aaPredicted RBP18.55■□□□□ 0.56
HOXC11-201ENST00000243082 ZNF140P52738 457 aaPredicted RBP18.55■□□□□ 0.56
HOXC11-201ENST00000243082 CDKN2DP55273 166 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 CSHL1Q14406 222 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 SEMA3AQ14563 771 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 FIBCD1Q8N539 461 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 MAB21L3Q8N8X9 362 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 KLHL23Q8NBE8 558 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 MDGA1Q8NFP4 955 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 RMDN1Q96DB5 314 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 ALG14Q96F25 216 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 TSPAN17Q96FV3 270 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 CDKN2AIPNLQ96HQ2 116 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 UBXN10Q96LJ8 280 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 BTBD10Q9BSF8 475 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 NLE1Q9NVX2 485 aaPredicted RBP18.55■□□□□ 0.56
HOXC11-201ENST00000243082 SSX2IPQ9Y2D8 614 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 RAI2Q9Y5P3 530 aa18.55■□□□□ 0.56
HOXC11-201ENST00000243082 ZBBXA8MT70 800 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CXCL14O95715 111 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CRTAMO95727 393 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CHRNGP07510 517 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 ESRRAP11474 423 aaPredicted RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 NAGLUP54802 743 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 SLC20A2Q08357 652 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 INO80DQ53TQ3 878 aaPredicted RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 VWA5B1Q5TIE3 1220 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 OR4L1Q8NH43 312 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 SH3RF2Q8TEC5 729 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 MRPS31Q92665 395 aaKnown RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 SMIM14Q96QK8 99 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 LHX3Q9UBR4 397 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 APOBEC2Q9Y235 224 aaKnown RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CRYL1Q9Y2S2 319 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CSKP41240 450 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CCR10P46092 362 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 FAM83EQ2M2I3 478 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 MRNIPQ6NTE8 343 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 ZNF549Q6P9A3 640 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 NCEH1Q6PIU2 408 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 TMEM207Q6UWW9 146 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 RINLQ6ZS11 566 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 TTC8Q8TAM2 541 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 ANKRD49Q8WVL7 239 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CLP1Q92989 425 aaKnown RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 CADM1Q9BY67 442 aaKnown RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 COG4Q9H9E3 785 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 GPAMQ9HCL2 828 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 DNMT3BQ9UBC3 853 aaKnown RBP18.54■□□□□ 0.56
HOXC11-201ENST00000243082 VPS28Q9UK41 221 aa18.54■□□□□ 0.56
HOXC11-201ENST00000243082 TYW5A2RUC4 315 aaKnown RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 LRG1P02750 347 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 LTA4HP09960 611 aaKnown RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 CCDC166P0CW27 439 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 PSMA3P25788 255 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 KPNA2P52292 529 aaKnown RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 SLC7A9P82251 487 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 TRAF2Q12933 501 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 UBAP2LQ14157 1087 aaKnown RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 RCN2Q14257 317 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 TAF1AQ15573 450 aaPredicted RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 ARL13AQ5H913 290 aaPredicted RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 TECRLQ5HYJ1 363 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 EPGNQ6UW88 154 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 HTR3DQ70Z44 454 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 TDRD5Q8NAT2 981 aaKnown RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 LPCAT1Q8NF37 534 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 BHMTQ93088 406 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 ILKAPQ9H0C8 392 aaPredicted RBP18.53■□□□□ 0.56
HOXC11-201ENST00000243082 CATSPERZQ9NTU4 200 aa18.53■□□□□ 0.56
HOXC11-201ENST00000243082 TAS2R1Q9NYW7 299 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms