RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 OR1F2PQ96R84 312 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 MPHOSPH6Q99547 160 aaKnown RBP4.19□□□□□ -1.74
CD44-239ENST00000639002 PTPRHQ9HD43 1115 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 ZNF224Q9NZL3 707 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 RRP7AQ9Y3A4 280 aaKnown RBP4.19□□□□□ -1.74
CD44-239ENST00000639002 PCDHGB5Q9Y5G0 923 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 PCDHAC2Q9Y5I4 1007 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 A3GALT2U3KPV4 340 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 NOTCH3Q9UM47 2321 aa4.19□□□□□ -1.74
CD44-239ENST00000639002 CCDC194A0A1B0GVG4 234 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 TYW5A2RUC4 315 aaKnown RBP4.18□□□□□ -1.74
CD44-239ENST00000639002 VWA3AA6NCI4 1184 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 WEE2P0C1S8 567 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 CFC1BP0CG36 223 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 CFC1P0CG37 223 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 HNRNPH1P31943 449 aaKnown RBP4.18□□□□□ -1.74
CD44-239ENST00000639002 BLKP51451 505 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 FUT6P51993 359 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 CRIP2P52943 208 aaPredicted RBP4.18□□□□□ -1.74
CD44-239ENST00000639002 CLDN2P57739 230 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 KRTAP10-12P60413 245 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 ECT2LQ008S8 904 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 TROAPQ12815 778 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 BRD3Q15059 726 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 IL17RCQ8NAC3 791 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 GJC3Q8NFK1 279 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 LNX1Q8TBB1 728 aaPredicted RBP4.18□□□□□ -1.74
CD44-239ENST00000639002 TMEM255BQ8WV15 326 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 MMTAG2Q9BU76 263 aaKnown RBP4.18□□□□□ -1.74
CD44-239ENST00000639002 MROH8Q9H579 483 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 EPHX3Q9H6B9 360 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 SIX4Q9UIU6 781 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 KCNS2Q9ULS6 477 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 CDC14AQ9UNH5 594 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 CGNL1Q0VF96 1302 aa4.18□□□□□ -1.74
CD44-239ENST00000639002 ARHGAP10A1A4S6 786 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 SOCS6O14544 535 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 KLK10O43240 276 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 ANP32CO43423 234 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 ZNF8P17098 575 aaPredicted RBP4.17□□□□□ -1.74
CD44-239ENST00000639002 EDN2P20800 178 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 HDAC4P56524 1084 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 ARHGEF6Q15052 776 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 EDRF1Q3B7T1 1238 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 B3GNT6Q6ZMB0 384 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 NOXA1Q86UR1 476 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 MAB21L3Q8N8X9 362 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 FIG4Q92562 907 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 SH3KBP1Q96B97 665 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 COG8Q96MW5 612 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 PHF7Q9BWX1 381 aaPredicted RBP4.17□□□□□ -1.74
CD44-239ENST00000639002 ITM2CQ9NQX7 267 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 C1RLQ9NZP8 487 aa4.17□□□□□ -1.74
CD44-239ENST00000639002 A0A0G2JPF8 293 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 HNRNPCL3B7ZW38 293 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 PEX12O00623 359 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 HNRNPCL1O60812 293 aaKnown RBP4.16□□□□□ -1.74
CD44-239ENST00000639002 HNRNPCL4P0DMR1 293 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 SRCP12931 536 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 PTPN2P17706 415 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 NR1H2P55055 460 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 CHRNDQ07001 517 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 TNFAIP1Q13829 316 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 ANKRD54Q6NXT1 300 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 TBC1D26Q86UD7 250 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 FOXRED2Q8IWF2 684 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 KLHDC8BQ8IXV7 354 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 RND1Q92730 232 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 TBC1D20Q96BZ9 403 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 TTC14Q96N46 770 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 UHRF2Q96PU4 802 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 EPYCQ99645 322 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 NOD2Q9HC29 1040 aa4.16□□□□□ -1.74
CD44-239ENST00000639002 DDX4Q9NQI0 724 aaKnown RBP4.16□□□□□ -1.74
CD44-239ENST00000639002 P2RY10O00398 339 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 PLRG1O43660 514 aaKnown RBP4.15□□□□□ -1.75
CD44-239ENST00000639002 NDUFB4O95168 129 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 CRYAAP02489 173 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 SLC20A2Q08357 652 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 DMP1Q13316 513 aaPredicted RBP4.15□□□□□ -1.75
CD44-239ENST00000639002 NAA25Q14CX7 972 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 ADCK5Q3MIX3 580 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 ANO1Q5XXA6 986 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 GDPD4Q6W3E5 623 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 LSM14AQ8ND56 463 aaKnown RBP4.15□□□□□ -1.75
CD44-239ENST00000639002 STAMQ92783 540 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 TAOK3Q9H2K8 898 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 KCNN2Q9H2S1 579 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 ZFP57Q9NU63 452 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 CISD1Q9NZ45 108 aaKnown RBP4.15□□□□□ -1.75
CD44-239ENST00000639002 TINAGQ9UJW2 476 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 PSAT1Q9Y617 370 aa4.15□□□□□ -1.75
CD44-239ENST00000639002 hCG_1642624A0A1W2PR95 340 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 RFPL2O75678 378 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 HLA-DOBP13765 273 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 KCNA5P22460 613 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 ANOS1P23352 680 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 MARK3P27448 753 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 STX2P32856 288 aa4.14□□□□□ -1.75
CD44-239ENST00000639002 TRAPPC10P48553 1259 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms