RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NFKB2Q00653 900 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 INO80DQ53TQ3 878 aaPredicted RBP19.57■□□□□ 0.72
CLN3-262ENST00000637699 KCTD16Q68DU8 428 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 STRADAQ7RTN6 431 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 CCNJLQ8IV13 435 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 PYROXD2Q8N2H3 581 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 OR6C4Q8NGE1 309 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 FAM172AQ8WUF8 416 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 CASKIN2Q8WXE0 1202 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 HMCESQ96FZ2 354 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 C11orf70Q9BRQ4 267 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 STK33Q9BYT3 514 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 PCDH12Q9NPG4 1184 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 ACSL6Q9UKU0 697 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 LOXL2Q9Y4K0 774 aa19.57■□□□□ 0.72
CLN3-262ENST00000637699 LRRK1Q38SD2 2015 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 NVLO15381 856 aaKnown RBP19.56■□□□□ 0.72
CLN3-262ENST00000637699 TNFP01375 233 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 PCCBP05166 539 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 LIPCP11150 499 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 EPHB2P29323 1055 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 PTPN9P43378 593 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 LIG3P49916 1009 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 UGP2Q16851 508 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 RTL3Q8N8U3 475 aaKnown RBP19.56■□□□□ 0.72
CLN3-262ENST00000637699 ATL2Q8NHH9 583 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 CENPIQ92674 756 aaPredicted RBP19.56■□□□□ 0.72
CLN3-262ENST00000637699 WDR92Q96MX6 357 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 LHX3Q9UBR4 397 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 IL17BQ9UHF5 180 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 NOCTQ9UK39 431 aaKnown RBP19.56■□□□□ 0.72
CLN3-262ENST00000637699 DAAM1Q9Y4D1 1078 aa19.56■□□□□ 0.72
CLN3-262ENST00000637699 PRAMEF33A0A0G2JMD5 474 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 RASA4BC9J798 803 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 RASA4O43374 803 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 PRAMEF10O60809 474 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 GFPT2O94808 682 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 CYP1A1P04798 512 aaPredicted RBP19.55■□□□□ 0.72
CLN3-262ENST00000637699 PRKCGP05129 697 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 CHRNB2P17787 502 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 SUOXP51687 545 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 CYTH1Q15438 398 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 MANEAQ5SRI9 462 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 SLFN11Q7Z7L1 901 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 VASH2Q86V25 355 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 ZFAND4Q86XD8 727 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 ZNF677Q86XU0 584 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 SFTPA2Q8IWL1 248 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 FAM46DQ8NEK8 389 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 GPR156Q8NFN8 814 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 PDXPQ96GD0 296 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 RBM15Q96T37 977 aaKnown RBP eCLIP19.55■□□□□ 0.72
CLN3-262ENST00000637699 SUV39H2Q9H5I1 410 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 SEPT10Q9P0V9 454 aa19.55■□□□□ 0.72
CLN3-262ENST00000637699 ITGB2P05107 769 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 FAM87AP0C7U9 286 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 KRT3P12035 628 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 RFC1P35251 1148 aaPredicted RBP19.54■□□□□ 0.72
CLN3-262ENST00000637699 ETV5P41161 510 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 MAPK10P53779 464 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 FMO1Q01740 532 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 CDR2Q01850 454 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 SERINC3Q13530 473 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 CFAP58Q5T655 872 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 ERAP2Q6P179 960 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 SCYL2Q6P3W7 929 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 XKR5Q6UX68 686 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 TAF8Q7Z7C8 310 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 PLA2G15Q8NCC3 412 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 HCAR2Q8TDS4 363 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 OR1E3Q8WZA6 343 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 NTAN1Q96AB6 310 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 STARD5Q9NSY2 213 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 APPL1Q9UKG1 709 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 LRP4O75096 1905 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 COL12A1Q99715 3063 aa19.54■□□□□ 0.72
CLN3-262ENST00000637699 SCN8AQ9UQD0 1980 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 TLN1Q9Y490 2541 aaKnown RBP19.53■□□□□ 0.72
CLN3-262ENST00000637699 CREB3O43889 395 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 GLB1P16278 677 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 YBEYP58557 167 aaPredicted RBP19.53■□□□□ 0.72
CLN3-262ENST00000637699 ZFP36L1Q07352 338 aaKnown RBP19.53■□□□□ 0.72
CLN3-262ENST00000637699 MTM1Q13496 603 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 CERCAMQ5T4B2 595 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 DNAAF5Q86Y56 855 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 CAMK1DQ8IU85 385 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 USP7Q93009 1102 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 MRPL40Q9NQ50 206 aaKnown RBP19.53■□□□□ 0.72
CLN3-262ENST00000637699 FOXJ2Q9P0K8 574 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 LRIT1Q9P2V4 623 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 UBA2Q9UBT2 640 aaPredicted RBP19.53■□□□□ 0.72
CLN3-262ENST00000637699 DGKBQ9Y6T7 804 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 RNF215Q9Y6U7 377 aa19.53■□□□□ 0.72
CLN3-262ENST00000637699 TSPAN11A1L157 253 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 TMEM202A6NGA9 273 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 B4DGG1 531 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 BUB1BO60566 1050 aaPredicted RBP19.52■□□□□ 0.72
CLN3-262ENST00000637699 ITGB6P18564 788 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 GPD1P21695 349 aa19.52■□□□□ 0.72
CLN3-262ENST00000637699 CYP4F2P78329 520 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms