RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PCDHGA1Q9Y5H4 931 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 DUSP10Q9Y6W6 482 aa19.4■□□□□ 0.7
CLN3-260ENST00000637578 MAP1BP46821 2468 aaKnown RBP19.39■□□□□ 0.69
CLN3-260ENST00000637578 TMEM110-MUSTN1A8MSY1 372 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 ENC1O14682 589 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 PJA2O43164 708 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 PIAS2O75928 621 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 XPAP23025 273 aaPredicted RBP19.39■□□□□ 0.69
CLN3-260ENST00000637578 MMP12P39900 470 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 ARHGAP25P42331 645 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 NOP2P46087 812 aaKnown RBP19.39■□□□□ 0.69
CLN3-260ENST00000637578 SCNN1BP51168 640 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 BCL2L1Q07817 233 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 ANKRD20A8PQ5CZ79 823 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 TPRG1LQ5T0D9 272 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 TMPRSS7Q7RTY8 843 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 PGBD5Q8N414 524 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 ATPAF2Q8N5M1 289 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 TP53I13Q8NBR0 393 aaPredicted RBP19.39■□□□□ 0.69
CLN3-260ENST00000637578 KCTD6Q8NC69 237 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 MGME1Q9BQP7 344 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 WRAP53Q9BUR4 548 aaKnown RBP19.39■□□□□ 0.69
CLN3-260ENST00000637578 ATP8A1Q9Y2Q0 1164 aa19.39■□□□□ 0.69
CLN3-260ENST00000637578 CFAP69A5D8W1 941 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 TOR1BO14657 336 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 SDC3O75056 442 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 CSF2P04141 144 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 C1SP09871 688 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 GIMD1P0DJR0 217 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 IGFALSP35858 605 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 HADHBP55084 474 aaKnown RBP19.38■□□□□ 0.69
CLN3-260ENST00000637578 GALNT2Q10471 571 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 ZNF211Q13398 564 aaPredicted RBP19.38■□□□□ 0.69
CLN3-260ENST00000637578 MESDQ14696 234 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 NCBP2-AS2Q69YL0 99 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 ERAP2Q6P179 960 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 CCNI2Q6ZMN8 369 aaPredicted RBP19.38■□□□□ 0.69
CLN3-260ENST00000637578 MAP7D3Q8IWC1 876 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 TEX26Q8N6G2 289 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 KDF1Q8NAX2 398 aaPredicted RBP19.38■□□□□ 0.69
CLN3-260ENST00000637578 NUDCD1Q96RS6 583 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 C1QTNF7Q9BXJ2 289 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 MBNL1Q9NR56 388 aaKnown RBP19.38■□□□□ 0.69
CLN3-260ENST00000637578 UCKL1Q9NWZ5 548 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 TRIM10Q9UDY6 481 aa19.38■□□□□ 0.69
CLN3-260ENST00000637578 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.37■□□□□ 0.69
CLN3-260ENST00000637578 BTNL10A8MVZ5 291 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 TRIM38O00635 465 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 HTRA2O43464 458 aaPredicted RBP19.37■□□□□ 0.69
CLN3-260ENST00000637578 NME1P15531 152 aaKnown RBP19.37■□□□□ 0.69
CLN3-260ENST00000637578 YPEL5P62699 121 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 POLR2LP62875 67 aaKnown RBP19.37■□□□□ 0.69
CLN3-260ENST00000637578 SMAD1Q15797 465 aaKnown RBP19.37■□□□□ 0.69
CLN3-260ENST00000637578 PROX2Q3B8N5 592 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 RALGPS1Q5JS13 557 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 CFAP58Q5T655 872 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 KDM7AQ6ZMT4 941 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 PARGQ86W56 976 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 TXLNBQ8N3L3 684 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 PQLC3Q8N755 202 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 FATE1Q969F0 183 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 CAAP1Q9H8G2 361 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 AKAP13Q12802 2813 aa19.37■□□□□ 0.69
CLN3-260ENST00000637578 GOLGA8CPA6NN73 597 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 MFSD11O43934 449 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 CDK4P11802 303 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 C6P13671 934 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 GARSP41250 739 aaKnown RBP19.36■□□□□ 0.69
CLN3-260ENST00000637578 ACADVLP49748 655 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 LIG3P49916 1009 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 HNRNPKP61978 463 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLN3-260ENST00000637578 KIF5AQ12840 1032 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 RALGDSQ12967 914 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 DNAJC3Q13217 504 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 PDE1CQ14123 709 aaPredicted RBP19.36■□□□□ 0.69
CLN3-260ENST00000637578 ZNF235Q14590 738 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 ST3GAL2Q16842 350 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 MARC1Q5VT66 337 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 OR4C6Q8NH72 309 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 NOD2Q9HC29 1040 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 DNAJC28Q9NX36 388 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 KLF15Q9UIH9 416 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 TTC24A2A3L6 582 aaPredicted RBP19.36■□□□□ 0.69
CLN3-260ENST00000637578 TMEM8BA6NDV4 472 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 ZNF487B1APH4 448 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 SIGLEC6O43699 453 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 SOCS5O75159 536 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 CAPNS1P04632 268 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 CCDC175P0C221 793 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 CKMT2P17540 419 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 KDELR1P24390 212 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 GJC1P36383 396 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 MMP13P45452 471 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 EIF2B5Q13144 721 aaKnown RBP19.36■□□□□ 0.69
CLN3-260ENST00000637578 LRRC14Q15048 493 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 WSCD2Q2TBF2 565 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 ZNF542PQ5EBM4 170 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 VSIG1Q86XK7 387 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 BBS5Q8N3I7 341 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 NSMCE1Q8WV22 266 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms