RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 C1SP09871 688 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 CDK4P11802 303 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 C6P13671 934 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 JUNDP17535 347 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 CKMT2P17540 419 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 NFKBIAP25963 317 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 IGFALSP35858 605 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 ARHGAP25P42331 645 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 MMP13P45452 471 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 LIG3P49916 1009 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 ARSEP51690 589 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 PFN3P60673 137 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 YPEL5P62699 121 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 DAB2P98082 770 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 ITKQ08881 620 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 TBX2Q13207 712 aaPredicted RBP13.9□□□□□ -0.18
PNKP-228ENST00000637325 ZNF211Q13398 564 aaPredicted RBP13.9□□□□□ -0.18
PNKP-228ENST00000637325 FZD2Q14332 565 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 LRRC14Q15048 493 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 IRF4Q15306 451 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 ODF2Q5BJF6 829 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 CCNI2Q6ZMN8 369 aaPredicted RBP13.9□□□□□ -0.18
PNKP-228ENST00000637325 TMPRSS7Q7RTY8 843 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 ZSWIM9Q86XI8 627 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 TP53I13Q8NBR0 393 aaPredicted RBP13.9□□□□□ -0.18
PNKP-228ENST00000637325 PCDH19Q8TAB3 1148 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 PDCD6IPQ8WUM4 868 aaKnown RBP13.9□□□□□ -0.18
PNKP-228ENST00000637325 NUDCD1Q96RS6 583 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 ZNF670Q9BS34 389 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 MBNL1Q9NR56 388 aaKnown RBP13.9□□□□□ -0.18
PNKP-228ENST00000637325 GPR27Q9NS67 375 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 HAUS2Q9NVX0 235 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 USP24Q9UPU5 2620 aa13.9□□□□□ -0.18
PNKP-228ENST00000637325 TRIM38O00635 465 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 MFSD11O43934 449 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 PEX11BO96011 259 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 ELFN1P0C7U0 828 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 NME1P15531 152 aaKnown RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 MMP12P39900 470 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 GARSP41250 739 aaKnown RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 MAXP61244 160 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 GALNT2Q10471 571 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 PAFAH1B3Q15102 231 aaKnown RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 IFI16Q16666 785 aaKnown RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 NCBP2-AS2Q69YL0 99 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 TIGD7Q6NT04 549 aaPredicted RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 KDM7AQ6ZMT4 941 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 PGBD5Q8N414 524 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 OR4C6Q8NH72 309 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 BTN2A2Q8WVV5 523 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 ZCCHC14Q8WYQ9 949 aaKnown RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 ECHDC3Q96DC8 303 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 MGME1Q9BQP7 344 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 TMEM121BQ9BXQ6 578 aaPredicted RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 MAK16Q9BXY0 300 aaKnown RBP13.89□□□□□ -0.19
PNKP-228ENST00000637325 NOD2Q9HC29 1040 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 NT5MQ9NPB1 228 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 EVA1BQ9NVM1 165 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 INTUQ9ULD6 942 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 PCDHGC4Q9Y5F7 938 aa13.89□□□□□ -0.19
PNKP-228ENST00000637325 LRP4O75096 1905 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 LRRD1A4D1F6 860 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 CFAP69A5D8W1 941 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 A8MX80 341 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 TRAFD1O14545 582 aaPredicted RBP13.88□□□□□ -0.19
PNKP-228ENST00000637325 SCAMP1O15126 338 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 SOCS5O75159 536 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 MAP3K6O95382 1288 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 CPP00450 1065 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 PCCBP05166 539 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 TNNT1P13805 278 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 MX2P20592 715 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 KDELR1P24390 212 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 NOP2P46087 812 aaKnown RBP13.88□□□□□ -0.19
PNKP-228ENST00000637325 ACADVLP49748 655 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 ILKQ13418 452 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 WSCD2Q2TBF2 565 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 PROX2Q3B8N5 592 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 RALGPS1Q5JS13 557 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 TPRG1LQ5T0D9 272 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 FAXCQ5TGI0 409 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 DPPA4Q7L190 304 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 TMPRSS12Q86WS5 348 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 KDF1Q8NAX2 398 aaPredicted RBP13.88□□□□□ -0.19
PNKP-228ENST00000637325 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.88□□□□□ -0.19
PNKP-228ENST00000637325 LMX1AQ8TE12 382 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 RFFLQ8WZ73 363 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 RAPGEF5Q92565 580 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 ZNF830Q96NB3 372 aaPredicted RBP13.88□□□□□ -0.19
PNKP-228ENST00000637325 DUSP23Q9BVJ7 150 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 SLC13A1Q9BZW2 595 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 CAAP1Q9H8G2 361 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 NLGN3Q9NZ94 848 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 SPASTQ9UBP0 616 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 TTLL3Q9Y4R7 772 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 UNC13CQ8NB66 2214 aa13.88□□□□□ -0.19
PNKP-228ENST00000637325 URB1O60287 2271 aaKnown RBP13.88□□□□□ -0.19
PNKP-228ENST00000637325 FAM149AA5PLN7 773 aa13.87□□□□□ -0.19
PNKP-228ENST00000637325 MATN3O15232 486 aa13.87□□□□□ -0.19
PNKP-228ENST00000637325 AQP9O43315 295 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms