RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SLC7A4O43246 635 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 MGEA5O60502 916 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 RPLP2P05387 115 aaKnown RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 AKR1A1P14550 325 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 MSX2P35548 267 aaPredicted RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 RENBPP51606 427 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 CREB5Q02930 508 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 NOMO2Q5JPE7 1267 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 HECTD2Q5U5R9 776 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 PIK3R6Q5UE93 754 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 MSANTD2Q6P1R3 559 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 CILP2Q8IUL8 1156 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 SPATA2LQ8IUW3 424 aaPredicted RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 TADA1Q96BN2 335 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 TMA16Q96EY4 203 aaKnown RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 SLC39A13Q96H72 371 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 NDNQ99608 321 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 UNC93B1Q9H1C4 597 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 MFSD1Q9H3U5 465 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 COPS7BQ9H9Q2 264 aaPredicted RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 CACNA2D2Q9NY47 1150 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 PLK2Q9NYY3 685 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 UBAP1Q9NZ09 502 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 A0A0U1RQF3 1178 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 MMP2P08253 660 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 PMLP29590 882 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 ATP4BP51164 291 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 C1QTNF8P60827 252 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 ILF2Q12905 390 aaKnown RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 KDELC2Q7Z4H8 507 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 AHI1Q8N157 1196 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 NAT14Q8WUY8 206 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 GSTO2Q9H4Y5 243 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 ZNF696Q9H7X3 374 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 PRDM5Q9NQX1 630 aaPredicted RBP12.84□□□□□ -0.35
LINC00540-203ENST00000631321 A0A1W2PQH9 124 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 H0YJX3 145 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 PSMD12O00232 456 aaPredicted RBP12.83□□□□□ -0.35
LINC00540-203ENST00000631321 FBP2O00757 339 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 TRIM24O15164 1050 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 UBDO15205 165 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 CCDC166P0CW27 439 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 RHOQP17081 205 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 IMPDH1P20839 514 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 TRAP1Q12931 704 aaKnown RBP12.83□□□□□ -0.35
LINC00540-203ENST00000631321 TRIM25Q14258 630 aaKnown RBP12.83□□□□□ -0.35
LINC00540-203ENST00000631321 RBBP5Q15291 538 aaKnown RBP12.83□□□□□ -0.35
LINC00540-203ENST00000631321 PCSK7Q16549 785 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 USP41Q3LFD5 358 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 REP15Q6BDI9 236 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 C8orf82Q6P1X6 216 aaPredicted RBP12.83□□□□□ -0.35
LINC00540-203ENST00000631321 HACD2Q6Y1H2 254 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 TEX26Q8N6G2 289 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 RNF148Q8N7C7 305 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 L3HYPDHQ96EM0 354 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 DUS3LQ96G46 650 aaKnown RBP12.83□□□□□ -0.35
LINC00540-203ENST00000631321 CYP4F12Q9HCS2 524 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 EPS15L1Q9UBC2 864 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 PADI3Q9ULW8 664 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 TLR6Q9Y2C9 796 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 VWA7Q9Y334 891 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 AP4B1Q9Y6B7 739 aa12.83□□□□□ -0.35
LINC00540-203ENST00000631321 MYLKQ15746 1914 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 DOCK3Q8IZD9 2030 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 PTPRDP23468 1912 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 MOCS2O96007 188 aaPredicted RBP12.83□□□□□ -0.36
LINC00540-203ENST00000631321 SLC2A3P11169 496 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 GRIK1P39086 918 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 NFKB2Q00653 900 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 DYNC1I2Q13409 638 aaKnown RBP12.83□□□□□ -0.36
LINC00540-203ENST00000631321 C2orf69Q8N8R5 385 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 HASPINQ8TF76 798 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 ANKRD49Q8WVL7 239 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 PRICKLE1Q96MT3 831 aaPredicted RBP12.83□□□□□ -0.36
LINC00540-203ENST00000631321 TRPC7Q9HCX4 862 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 NT5MQ9NPB1 228 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 TMEM248Q9NWD8 314 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 PCDHB8Q9UN66 801 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 SCML2Q9UQR0 700 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 NYNRINQ9P2P1 1898 aaKnown RBP12.83□□□□□ -0.36
LINC00540-203ENST00000631321 SCN10AQ9Y5Y9 1956 aa12.83□□□□□ -0.36
LINC00540-203ENST00000631321 NLRC5Q86WI3 1866 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 E7ENX8 843 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 INPPL1O15357 1258 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 RNASEH2AO75792 299 aaKnown RBP12.82□□□□□ -0.36
LINC00540-203ENST00000631321 S1PR4O95977 384 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 ITGB1P05556 798 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 CD52P31358 61 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 CD86P42081 329 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 RPL5P46777 297 aaKnown RBP12.82□□□□□ -0.36
LINC00540-203ENST00000631321 FASTKQ14296 549 aaKnown RBP12.82□□□□□ -0.36
LINC00540-203ENST00000631321 IHHQ14623 411 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 IRAK1BP1Q5VVH5 260 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 CYHR1Q6ZMK1 362 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SPATA24Q86W54 205 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 TRPV1Q8NER1 839 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 HMCESQ96FZ2 354 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SYT17Q9BSW7 474 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SLC2A11Q9BYW1 496 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 ADA2Q9NZK5 511 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms