RNA–Protein interactions for RNA: ENST00000628078.2

TCF4-262, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 1,277 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-262	ENST00000628078	INO80D	Q53TQ3	878 aa	Predicted RBP	13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	CFAP58	Q5T655	872 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	DNAJC24	Q6P3W2	148 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	TRIM72	Q6ZMU5	477 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	ZSCAN30	Q86W11	494 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	PHF13	Q86YI8	300 aa	Predicted RBP	13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	FBXO39	Q8N4B4	442 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	PAF1	Q8N7H5	531 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	ENOX1	Q8TC92	643 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	SCG3	Q8WXD2	468 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	TTC9	Q92623	222 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	NAT6	Q93015	286 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	GFM1	Q96RP9	751 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	AGPAT1	Q99943	283 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	SLC39A8	Q9C0K1	460 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	KL	Q9UEF7	1012 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	SIK3	Q9Y2K2	1263 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	MFHAS1	Q9Y4C4	1052 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	PCDHGA8	Q9Y5G5	932 aa		13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	HELZ2	Q9BYK8	2649 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-262	ENST00000628078	TMEM202	A6NGA9	273 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078		J3QKU1	62 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078		K7ENP7	123 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	NTN3	O00634	580 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	RIOK3	O14730	519 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	TCEA3	O75764	348 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	TNF	P01375	233 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	CALB1	P05937	261 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	TPM2	P07951	284 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	ATXN8OS	P0DMR3	200 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	SLC5A2	P31639	672 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	UGT1A5	P35504	534 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	PAPOLA	P51003	745 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	ZNF143	P52747	638 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	COPB1	P53618	953 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	YBEY	P58557	167 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	ELP6	Q0PNE2	266 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	NFATC4	Q14934	902 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	CDKAL1	Q5VV42	579 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	INO80C	Q6PI98	192 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	ARHGAP36	Q6ZRI8	547 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	MON1B	Q7L1V2	547 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	RAB11FIP2	Q7L804	512 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	ARL10	Q8N8L6	244 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	TSEN2	Q8NCE0	465 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	C3orf20	Q8ND61	904 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	NEK11	Q8NG66	645 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	CCL4L1	Q8NHW4	92 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	OR1E3	Q8WZA6	343 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	PDXP	Q96GD0	296 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	RETREG1	Q9H6L5	497 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	CATSPERB	Q9H7T0	1116 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	TAS2R14	Q9NYV8	317 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	DKK3	Q9UBP4	350 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	PISD	Q9UG56	409 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	PCSK1N	Q9UHG2	260 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	LRP4	O75096	1905 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	ATM	Q13315	3056 aa		13.6	□□□□□ -0.23
TCF4-262	ENST00000628078	SETX	Q7Z333	2677 aa	Known RBP	13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	UNC13C	Q8NB66	2214 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	CXorf51A	A0A1B0GTR3	108 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	TCRBV5S1A1T	A0A578	114 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	ANKRD62	A6NC57	917 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	TEX33	O43247	280 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	ATMIN	O43313	823 aa	Predicted RBP	13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	ALPI	P09923	528 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	ITIH1	P19827	911 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	HTR1B	P28222	390 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	PEX5	P50542	639 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	BLK	P51451	505 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	INHBC	P55103	352 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	TPI1	P60174	286 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	SKOR1	P84550	965 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	UBXN1	Q04323	297 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	PARP15	Q460N3	678 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	ERAP2	Q6P179	960 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	DCUN1D2	Q6PH85	259 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	TAF8	Q7Z7C8	310 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	SRL	Q86TD4	932 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	GKN2	Q86XP6	184 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	TP53INP2	Q8IXH6	220 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	UMODL1-AS1	Q8N2C9	162 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	PELI3	Q8N2H9	469 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	FSTL5	Q8N475	847 aa	Predicted RBP	13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	FAM46D	Q8NEK8	389 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	CASKIN2	Q8WXE0	1202 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	NSMCE3	Q96MG7	304 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	WDR92	Q96MX6	357 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	LGR4	Q9BXB1	951 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	LRRN3	Q9H3W5	708 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	DHX35	Q9H5Z1	703 aa	Known RBP	13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	LRRC19	Q9H756	370 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	PDF	Q9HBH1	243 aa		13.59	□□□□□ -0.23
TCF4-262	ENST00000628078	TMEM110-MUSTN1	A8MSY1	372 aa		13.58	□□□□□ -0.24
TCF4-262	ENST00000628078	WASH4P	A8MWX3	477 aa		13.58	□□□□□ -0.24
TCF4-262	ENST00000628078		B4DGG1	531 aa		13.58	□□□□□ -0.24
TCF4-262	ENST00000628078	DFFA	O00273	331 aa		13.58	□□□□□ -0.24
TCF4-262	ENST00000628078	PLD2	O14939	933 aa		13.58	□□□□□ -0.24
TCF4-262	ENST00000628078	DAPK3	O43293	454 aa		13.58	□□□□□ -0.24
TCF4-262	ENST00000628078	PALM	O75781	387 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 729.9 ms