RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PPP2CBP62714 309 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 PPP2CAP67775 309 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 KLF1Q13351 362 aaPredicted RBP18.23■□□□□ 0.51
CLN3-239ENST00000628023 TEX44Q53QW1 395 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 ERAP2Q6P179 960 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 SLC13A5Q86YT5 568 aaPredicted RBP18.23■□□□□ 0.51
CLN3-239ENST00000628023 DEFB124Q8NES8 71 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 HCAR2Q8TDS4 363 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 VOPP1Q96AW1 172 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 BIRC7Q96CA5 298 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 VAT1Q99536 393 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 TPX2Q9ULW0 747 aaKnown RBP18.23■□□□□ 0.51
CLN3-239ENST00000628023 FADS3Q9Y5Q0 445 aa18.23■□□□□ 0.51
CLN3-239ENST00000628023 TNRC6BQ9UPQ9 1833 aaKnown RBP18.23■□□□□ 0.51
CLN3-239ENST00000628023 A0A1W2PQ67 120 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 TCRBV7S2A1N4TA0A589 114 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 TSPAN11A1L157 253 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 KCNN4O15554 427 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 AP1G1O43747 822 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 RNGTTO60942 597 aaKnown RBP18.22■□□□□ 0.51
CLN3-239ENST00000628023 ZNF189O75820 626 aaPredicted RBP18.22■□□□□ 0.51
CLN3-239ENST00000628023 CPP00450 1065 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 MAOBP27338 520 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 RBL1P28749 1068 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 MAT2AP31153 395 aaKnown RBP18.22■□□□□ 0.51
CLN3-239ENST00000628023 CD86P42081 329 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 CCR5P51681 352 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 GNG11P61952 73 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 POLR2LP62875 67 aaKnown RBP18.22■□□□□ 0.51
CLN3-239ENST00000628023 ELP6Q0PNE2 266 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 TRAF2Q12933 501 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 ARMC12Q5T9G4 340 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 ALG1LQ6GMV1 187 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 NEK5Q6P3R8 708 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 CNTD1Q8N815 330 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 C10orf88Q9H8K7 445 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 EIF2B4Q9UI10 523 aaKnown RBP18.22■□□□□ 0.51
CLN3-239ENST00000628023 ITM2BQ9Y287 266 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 RAI2Q9Y5P3 530 aa18.22■□□□□ 0.51
CLN3-239ENST00000628023 ANKRD36A6QL64 1941 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 A0A1W2PQU0 124 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 TRAFD1O14545 582 aaPredicted RBP18.21■□□□□ 0.51
CLN3-239ENST00000628023 ARHGAP33O14559 1287 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 TSPAN6O43657 245 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 FGGP02679 453 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 ATP1A1P05023 1023 aaKnown RBP18.21■□□□□ 0.51
CLN3-239ENST00000628023 IGHV4-34P06331 123 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 TIMP2P16035 220 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 NFKBIAP25963 317 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 SUOXP51687 545 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 NIPAL4Q0D2K0 466 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 WASHC5Q12768 1159 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 UGP2Q16851 508 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 FAM182AQ5T1J6 154 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 KIAA1161Q6NSJ0 714 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 PID1Q7Z2X4 250 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 PRPF39Q86UA1 669 aaKnown RBP18.21■□□□□ 0.51
CLN3-239ENST00000628023 TRIM69Q86WT6 500 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 HORMAD1Q86X24 394 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 ZCCHC9Q8N567 271 aaKnown RBP18.21■□□□□ 0.51
CLN3-239ENST00000628023 CXorf40AQ8TE69 158 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 MAIP1Q8WWC4 291 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 ECHDC3Q96DC8 303 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 FEM1CQ96JP0 617 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 TEKT5Q96M29 485 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 NSMCE3Q96MG7 304 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 CAPN10Q9HC96 672 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 PCDH12Q9NPG4 1184 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 GGT7Q9UJ14 662 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 R3HDM2Q9Y2K5 976 aaKnown RBP18.21■□□□□ 0.51
CLN3-239ENST00000628023 PCDHB9Q9Y5E1 797 aa18.21■□□□□ 0.51
CLN3-239ENST00000628023 PGLSO95336 258 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 PRKCGP05129 697 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 PROS1P07225 676 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 CD27P26842 260 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 EPHB1P54762 984 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 RPS21P63220 83 aaKnown RBP18.2■□□□□ 0.5
CLN3-239ENST00000628023 FAM193AP78312 1265 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 LONRF2Q1L5Z9 754 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 SETMARQ53H47 684 aaPredicted RBP18.2■□□□□ 0.5
CLN3-239ENST00000628023 ZSWIM9Q86XI8 627 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 NDUFAF2Q8N183 169 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 ZNF567Q8N184 647 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 MINDY1Q8N5J2 469 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 ARRDC2Q8TBH0 407 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 ATG4AQ8WYN0 398 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 DNASE2BQ8WZ79 361 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 PBKQ96KB5 322 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 RBM15Q96T37 977 aaKnown RBP eCLIP18.2■□□□□ 0.5
CLN3-239ENST00000628023 WRAP53Q9BUR4 548 aaKnown RBP18.2■□□□□ 0.5
CLN3-239ENST00000628023 FRMD8P1Q9BZ68 369 aaPredicted RBP18.2■□□□□ 0.5
CLN3-239ENST00000628023 SLC25A51Q9H1U9 297 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 GLOD4Q9HC38 313 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 RSPH14Q9UHP6 348 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 TRHDEQ9UKU6 1024 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 PCNX2A6NKB5 2137 aa18.2■□□□□ 0.5
CLN3-239ENST00000628023 A0A1W2PPC4 97 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 F5H423 210 aaPredicted RBP18.19■□□□□ 0.5
CLN3-239ENST00000628023 AREL1O15033 823 aa18.19■□□□□ 0.5
CLN3-239ENST00000628023 HTRA2O43464 458 aaPredicted RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms